ggKbase | organisms

Consensus taxonomy: Flavobacteriales → Flavobacteriia → Bacteroidetes → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Curated version: solids_Flavobacteriales_1

Properties

Avg. coverage: 3.98 Longest contig: 8.96 Kbp Bin length: 1.35 Mbp GC content: 39.55 %

Contigs count: 814 Features count: 1745 rRNAs count: 0 tRNAs count: 8

Genome completeness

partial RP 15 / 55 BSCG 13 / 51 ASCG 2 / 38

Displaying items 201-250 of 814 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_33490 Species: Chryseobacterium indologenes (66.67%)	3	1216 bp	42.35	6.54	92.02
scnpilot_solids1_trim150_scaffold_20893	3	1706 bp	38.45	4.40	70.63
scnpilot_solids1_trim150_scaffold_6455 Species: uncultured Flavobacteriia bacterium (66.67%)	3	3981 bp	36.32	4.71	88.70
scnpilot_solids1_trim150_scaffold_11863 Class: Flavobacteriia (66.67%)	3	2555 bp	34.91	3.99	94.40
scnpilot_solids1_trim150_scaffold_14375 Species: Chryseobacterium gleum (66.67%)	3	2229 bp	35.04	4.44	92.46
scnpilot_solids1_trim150_scaffold_39146 Species: Flavobacterium reichenbachii (50%)	2	1085 bp	33.55	6.08	75.21
scnpilot_solids1_trim150_scaffold_20899 Species: R_Fluviicola_43_260 (100%)	2	1706 bp	42.85	3.69	98.83
scnpilot_solids1_trim150_scaffold_19259 Species: R_Fluviicola_43_260 (50%)	2	2548 bp	42.94	3.12	84.30
scnpilot_solids1_trim150_scaffold_29331 Species: R_Fluviicola_43_260 (50%)	2	1339 bp	45.11	2.69	99.48
scnpilot_solids1_trim150_scaffold_33755 Species: Fluviicola taffensis (50%)	2	1209 bp	38.46	3.23	82.63
scnpilot_solids1_trim150_scaffold_30875 Species: Chryseobacterium vrystaatense (50%)	2	1290 bp	37.75	2.79	98.37
scnpilot_solids1_trim150_scaffold_30876 Species: R_Fluviicola_43_260 (50%)	2	1290 bp	37.05	2.67	90.47
scnpilot_solids1_trim150_scaffold_33501 Species: Fluviicola taffensis (50%)	2	1216 bp	44.82	4.69	101.15
scnpilot_solids1_trim150_scaffold_22734 Species: Flavobacterium sp. AED (50%)	2	1609 bp	46.55	4.10	97.14
scnpilot_solids1_trim150_scaffold_6463 Species: Flavobacterium subsaxonicum (50%)	2	3979 bp	44.16	7.99	97.19
scnpilot_solids1_trim150_scaffold_18441 Species: Elizabethkingia meningoseptica (50%)	2	1862 bp	40.55	3.87	87.33
scnpilot_solids1_trim150_scaffold_37403 Species: Flavobacterium enshiense (50%)	2	1122 bp	39.13	2.67	93.32
scnpilot_solids1_trim150_scaffold_24844 Species: R_Fluviicola_43_260 (50%)	2	1509 bp	40.76	4.08	87.67
scnpilot_solids1_trim150_scaffold_33252 Species: Flavobacterium hibernum (50%)	2	1222 bp	39.53	4.66	73.16
scnpilot_solids1_trim150_scaffold_22742 Species: Chryseobacterium jeonii (50%)	2	1609 bp	40.46	3.17	80.17
scnpilot_solids1_trim150_scaffold_36262 Species: Fluviicola taffensis (100%)	2	1148 bp	44.60	3.40	99.30
scnpilot_solids1_trim150_scaffold_41560 Species: Chryseobacterium taiwanense (50%)	2	1037 bp	42.04	2.31	86.50
scnpilot_solids1_trim150_scaffold_36264 Species: Nonlabens ulvanivorans (50%)	2	1148 bp	41.29	3.14	83.36
scnpilot_solids1_trim150_scaffold_38442 Species: Chryseobacterium sp. CF314 (50%)	2	1099 bp	38.49	2.32	88.99
scnpilot_solids1_trim150_scaffold_30634 Species: Chryseobacterium sp. P1-3 (50%)	2	1298 bp	35.21	3.58	100.77
scnpilot_solids1_trim150_scaffold_36011 Species: Chryseobacterium sp. P1-3 (50%)	2	1153 bp	34.26	2.60	83.26
scnpilot_solids1_trim150_scaffold_30892 Species: Flavobacterium frigoris (50%)	2	1289 bp	35.84	3.26	97.52
scnpilot_solids1_trim150_scaffold_20661 Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1721 bp	34.28	4.88	93.43
scnpilot_solids1_trim150_scaffold_20407 Species: Blattabacterium sp. (Panesthia angustipennis spadica) (50%)	2	1737 bp	33.91	3.89	77.03
scnpilot_solids1_trim150_scaffold_16319 Species: Flavobacterium subsaxonicum (50%)	2	2031 bp	46.77	3.55	88.63
scnpilot_solids1_trim150_scaffold_43176 Species: R_Fluviicola_43_260 (50%)	2	1009 bp	40.44	2.68	92.77
scnpilot_solids1_trim150_scaffold_34185 Species: Myroides profundi (50%)	2	1198 bp	30.55	2.88	97.41
scnpilot_solids1_trim150_scaffold_23001 Species: Chryseobacterium antarcticum (50%)	2	1596 bp	35.59	4.42	92.29
scnpilot_solids1_trim150_scaffold_25801 Species: Zunongwangia profunda (50%)	2	1469 bp	41.46	2.96	95.58
scnpilot_solids1_trim150_scaffold_26506 Species: Flavobacteriaceae bacterium 3519-10 (50%)	2	1441 bp	39.07	3.02	75.57
scnpilot_solids1_trim150_scaffold_30131 Species: Flavobacteria bacterium BAL38 (50%)	2	1313 bp	37.40	4.80	95.96
scnpilot_solids1_trim150_scaffold_30388 Species: Chryseobacterium soli (50%)	2	1306 bp	41.58	2.53	99.69
scnpilot_solids1_trim150_scaffold_28692 Species: Flavobacterium indicum (50%)	2	1359 bp	35.47	2.87	88.08
scnpilot_solids1_trim150_scaffold_35397 Species: Fluviicola taffensis (50%)	2	1168 bp	37.16	3.60	100.69
scnpilot_solids1_trim150_scaffold_43438 Species: Chryseobacterium taiwanense (50%)	2	1005 bp	42.69	4.18	96.12
scnpilot_solids1_trim150_scaffold_30134 Species: R_Fluviicola_43_260 (100%)	2	1313 bp	41.20	2.06	98.25
scnpilot_solids1_trim150_scaffold_38199 Species: Chryseobacterium sp. P1-3 (50%)	2	1104 bp	40.31	2.45	80.16
scnpilot_solids1_trim150_scaffold_20928 Species: Flavobacteriales bacterium BRH_c54 (50%)	2	1704 bp	40.26	2.82	92.25
scnpilot_solids1_trim150_scaffold_26000 Species: Flavobacterium indicum (50%)	2	1461 bp	37.71	5.13	63.86
scnpilot_solids1_trim150_scaffold_38456 Species: R_Fluviicola_43_260 (50%)	2	1099 bp	40.58	2.59	99.64
scnpilot_solids1_trim150_scaffold_39689 Species: Flavobacterium sp. AED (50%)	2	1074 bp	42.92	5.59	93.85
scnpilot_solids1_trim150_scaffold_40610 Species: Flavobacterium sp. 316 (50%)	2	1056 bp	39.87	3.41	98.01
scnpilot_solids1_trim150_scaffold_40099 Species: R_Fluviicola_43_260 (100%)	2	1065 bp	39.44	4.08	96.06
scnpilot_solids1_trim150_scaffold_37941 Species: Elizabethkingia sp. BM10 (50%)	2	1110 bp	32.61	4.05	99.19
scnpilot_solids1_trim150_scaffold_41325 Species: R_Fluviicola_43_260 (50%)	2	1041 bp	36.79	3.46	87.90

Displaying items 201-250 of 814 in total

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SCNPILOT_SOLID_1_TRIM150_Flavobacteriales_40_4

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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