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scnpilot_solids1_trim150_scaffold_2262_6

Organism: SCNPILOT_SOLID_1_TRIM150_Xanthomonadales_66_9

near complete RP 45 / 55 MC: 4 BSCG 42 / 51 MC: 5 ASCG 11 / 38 MC: 2
Location: comp(7136..7666)

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6Y9_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 81.8
  • Coverage: 165.0
  • Bit_score: 265
  • Evalue 4.90e-68
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL95230.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.8
  • Coverage: 165.0
  • Bit_score: 265
  • Evalue 6.90e-68
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 42.9
  • Coverage: 170.0
  • Bit_score: 130
  • Evalue 4.50e-28

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 531
ATGGTCGAATGCAGCCAGATGCCGGCGATGGGTTCGACCGACGCGTTGTTTGCCGAGGTCTATGAGCGCCTGAAAGCCATGGCTTCGCGGCGACTTGCCGGGCAGCGTCGCGGCACGCTGGACACCACCGAACTGGTGCACGAGTTGTACCTGCGCATGGGTGATCGCCCGGCCTTGCAATTTCGCGAGCCCGCGCAATTTTTTGCTTACGCCGCGCACGCCATGCGCCACTTGTTGATCAATCGGGCGCGCGACCGCTTGCGGTTGTGCGCGGGCGGACAGTGGGGCCGCGTCACGCTCGACGACCGCAATCCGAAACTGGCAATCGAAGCTGCGGAACAGGCGTTGGCGCTGGATGCGGCACTGGGTGCGCTGGAACAGGCCGACGCGCGTGCGGCGAAGGTGGTCGAATTGCGCTATTTCGCGGGACTCAGCCTGGAACAGGTGGCCGAAACATTGGGGCTGGCGCGTCGAACCATCGACCGCGATTGGCGTTTCGCACGCGCGTTCATCAAGGCGCGGCTGGATTGA
PROTEIN sequence
Length: 177
MVECSQMPAMGSTDALFAEVYERLKAMASRRLAGQRRGTLDTTELVHELYLRMGDRPALQFREPAQFFAYAAHAMRHLLINRARDRLRLCAGGQWGRVTLDDRNPKLAIEAAEQALALDAALGALEQADARAAKVVELRYFAGLSLEQVAETLGLARRTIDRDWRFARAFIKARLD*