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scnpilot_solids1_trim150_scaffold_1_curated_23

Organism: solids_Castellaniella_1

near complete RP 52 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(22663..22866)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellani similarity UNIPROT
DB: UniProtKB
  • Identity: 89.6
  • Coverage: 67.0
  • Bit_score: 123
  • Evalue 9.50e-26
DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 82.1
  • Coverage: 67.0
  • Bit_score: 109
  • Evalue 4.10e-22
DNA-directed RNA polymerase subunit omega n=1 Tax=Bordetella sp. FB-8 RepID=UPI00037A25ED similarity UNIREF
DB: UNIREF100
  • Identity: 83.6
  • Coverage: 67.0
  • Bit_score: 111
  • Evalue 2.70e-22

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Taxonomy

Castellaniella defragrans → Castellaniella → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 204
ATGGCCCGCATCACCGTCGAAGACTGCCTCCAGCAGATTCCCAACCGCTTTGATCTGACTCTGGCGGCCACCTACCGCGCCCGCGAACTGGCCCAGGGCCACGAAGCGCGCATCCAGAGCCACAACAAACCCACCGTGACCGCATTGCGCGAAATCGCCCAGAGCCAGGTCGGCACTGAAATGCTGCGCAAGGTCCCCACCTGA
PROTEIN sequence
Length: 68
MARITVEDCLQQIPNRFDLTLAATYRARELAQGHEARIQSHNKPTVTALREIAQSQVGTEMLRKVPT*