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scnpilot_solids1_trim150_scaffold_8970_curated_3

Organism: solids_Lysobacter_1

partial RP 26 / 55 MC: 1 BSCG 26 / 51 ASCG 2 / 38
Location: 1522..2232

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Rhodanobacter sp. 115 RepID=I4WWC3_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 58.3
  • Coverage: 228.0
  • Bit_score: 262
  • Evalue 5.50e-67
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 61.4
  • Coverage: 220.0
  • Bit_score: 273
  • Evalue 3.40e-70
RNA polymerase sigma factor, sigma-70 family similarity KEGG
DB: KEGG
  • Identity: 58.8
  • Coverage: 228.0
  • Bit_score: 258
  • Evalue 2.50e-66

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 711
ATGAACACGATTGCAGCAGGCGCCGCGCGCGACTACGCCGCACTGGACGATGCCGCGCTGGTGGCCTGCGTGCTCGGCGGCGAGCGCGATGCGTTCCGGCAGATCATGCAGCGCTGCAATCAGCGCATGTTCCGGGTGGTGCGCGGGGTCATCCGCAACGAGGCCGAGGCCGAGGACGTGGTGCAGGAAGCCTACGTGCACGGCTACGAAAAGCTGGGCAGCTTCCGGGGCGAAGCGTCGCTGGCGACCTGGCTGACCCGCATCGCCCTCAATGAAGCCTATGGTCGCCTGCGCCGGAGGCGCGACAGCGTGGACATCGACGATATCAACAGGGGCGCGCCGGTGGCGGCGCAGCTGATTGCGTTTCCTGGGCACGTGCTGGGCGAGGACCCCGCCGAGGAAGCGGCGCGCGCGCAGCTGCGCCGGCTGCTGGAACAGGCGGTGGATGAACTGCCGGAAGCGTTCCGGCTGGTGTACGTGCTGCGCGACGTGGAAGGCTGCTCGGTGGAAGAAACCGCAAGCGCCCTGGAGATCCGCCAGGAAACCGTGAAAACCCGCCTGCATCGCGCCCGTCGCCAGCTGCGCGAGGTGCTGGCCAGCCGCGTCTCGGCGACACGGGTGGACGCGTTCCAGTTCATGGGCGCGCGCTGCGCGCGCATGACCGACGTGGTGATGGCGCGGATCGCGGCACTGCCCCGCACGCAGGCTTGA
PROTEIN sequence
Length: 237
MNTIAAGAARDYAALDDAALVACVLGGERDAFRQIMQRCNQRMFRVVRGVIRNEAEAEDVVQEAYVHGYEKLGSFRGEASLATWLTRIALNEAYGRLRRRRDSVDIDDINRGAPVAAQLIAFPGHVLGEDPAEEAARAQLRRLLEQAVDELPEAFRLVYVLRDVEGCSVEETASALEIRQETVKTRLHRARRQLREVLASRVSATRVDAFQFMGARCARMTDVVMARIAALPRTQA*