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scnpilot_solids1_trim150_scaffold_6443_curated_2

Organism: solids_Lysobacter_1

partial RP 26 / 55 MC: 1 BSCG 26 / 51 ASCG 2 / 38
Location: 1059..2207

Top 3 Functional Annotations

Value Algorithm Source
Putrescine-binding periplasmic protein {ECO:0000256|PIRNR:PIRNR019574}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.0
  • Coverage: 383.0
  • Bit_score: 599
  • Evalue 4.30e-168
Transcription factor jumonji, JmjC id=3023002 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 63.0
  • Coverage: 387.0
  • Bit_score: 489
  • Evalue 3.40e-135
potF; PotF similarity KEGG
DB: KEGG
  • Identity: 56.4
  • Coverage: 349.0
  • Bit_score: 400
  • Evalue 6.60e-109

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Taxonomy

Lysobacter capsici → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1149
GTGACCCTGCGCCTTGCCCCCCTTGCCTGCGCCGTGCTGCTGCTGACCGCCTGCGGCGGCAAGCCCGATGCGACGGACGCTGCCGCCCGCCCGGCTGGCCCGGAAGAGAAAGTCCTCAACGTCTACAACTGGTCCGACTACGTGGCCGAGGACACCATCGCCAACTTCGAGAAGGCGACCGGCATCAAGGTCAACTACGACGTCTATTCCGAGAACGAGACGCTTGAGACCAAGTTGACCGCCGGCAGCAGCGGCTACGACGTGGTGTTCCCGTCCGCGCGCCCGTTCGCGCAGCGCCAGATCAAGGCCGGGCTGTACCTGCCGCTGGACAAGGCGAAGGTGCCGAACCTGTCGCACCTCGACCCCGCGATCCTGCAGGGGCTGGCCGACATCGACCCGGGCAACGCCTACGTGGTGCCATACATGTGGGGCACCACCGGCCTGGGCATCAACGTTGACAAAGTGAAGGCGGCGCTCGGCGAAAACGCGCCGATCGATTCGTGGAACCTGCTGTTCGACCCGGCCAACGCCGCCAAGCTGGCCAAGTGCGGCATCAGCGTGCTGGACGACGACCAGGAGGCCTTCGGCGCCGCGCTGATCTGGAAGGGCAAGGACCCGAACGCCGGCGCCGCCGACGAGATCGACACGGTCAAGCAGGTGTATGCCGCGATCCGCCCGCACATCCGCACCTTCAACAACGCCGAGTACAAGGACGCGCTGGCCAACGGCGACGTGTGCGTGGCGATGGGCTACTCGGGCGACATCCTCGGTGCCGCCGACGCCGCGGCCGAAGCGGCCGAAGCCACCGGCAAGCCGGCGCCCGACATCCGCTACGTGATCCCGAAGGAGGGCGCGATCCGCTGGGTGGACGTGATGGCGATCCCCAAGGACGCCAAGCACCCGGGCAACGCGCAGGCCTTCATCGACTACATGCTGGACCCGAAGGTCTCCGCCGCGATCACCGACGCGGTGGGCTACGCGAACCCGAACAAGGACGCCACCGCGCTGGTCGACCCCGACATCGCGAACAACCAGGGCGTGTACCCGCCGGAAGCCGTGCGCGCCAAGCTGGTCGACCCCAAGTCCCTGCCGGAAGCCGTGCAGCGCCAGCGCGTGCGCGCCTGGACCGCGATCAAGAGCGGACGCTGA
PROTEIN sequence
Length: 383
VTLRLAPLACAVLLLTACGGKPDATDAAARPAGPEEKVLNVYNWSDYVAEDTIANFEKATGIKVNYDVYSENETLETKLTAGSSGYDVVFPSARPFAQRQIKAGLYLPLDKAKVPNLSHLDPAILQGLADIDPGNAYVVPYMWGTTGLGINVDKVKAALGENAPIDSWNLLFDPANAAKLAKCGISVLDDDQEAFGAALIWKGKDPNAGAADEIDTVKQVYAAIRPHIRTFNNAEYKDALANGDVCVAMGYSGDILGAADAAAEAAEATGKPAPDIRYVIPKEGAIRWVDVMAIPKDAKHPGNAQAFIDYMLDPKVSAAITDAVGYANPNKDATALVDPDIANNQGVYPPEAVRAKLVDPKSLPEAVQRQRVRAWTAIKSGR*