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scnpilot_solids1_trim150_scaffold_5035_curated_5

Organism: solids_Lysobacter_1

partial RP 26 / 55 MC: 1 BSCG 26 / 51 ASCG 2 / 38
Location: comp(2641..3213)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor {ECO:0000313|EMBL:KGM54679.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.7
  • Coverage: 188.0
  • Bit_score: 257
  • Evalue 1.50e-65
Sigma-70 family RNA polymerase sigma factor id=3013681 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=unknown taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 68.2
  • Coverage: 195.0
  • Bit_score: 245
  • Evalue 3.30e-62
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 59.8
  • Coverage: 194.0
  • Bit_score: 212
  • Evalue 1.70e-52

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 573
ATGCTGATGCAGACCATGCCGCTACCGCAGGCCACTGAATCCGACGACGACGCCGGATTGGCGCGGCGCGCGGCCCGCGCCGACGTGTCTGCATTCGAGCAGCTCTACCGCCGCCACCACCGCCGCGTGCATGGGGTGATCGTGCGGCTGGTGGGGCAGGCGGGGACGCGTGCGGAGGACCTCACCCAGGAGGCCTTCGTGCGCGCCTGGCAGGCGCTGCCGGCCTTCCGCTTCGAGAGCGCGGTATCGACCTGGCTGCATCGCCTGGCGGTCAATACCGCGCTGATGGAGATGCGGGCGCGTCGCAGCCGGTCGTGGCCGGAAGAGGACGATGACGCGCTGGAAACGGTGGCAACCCCGGATACCGCCGGCCGTGCCGTGCTCGGCCGCGACCTGGAGCGTGCGGTCGCGAGCCTGCCGTCGCGCGCGCGCGCGGTGCTGGTGTTGCACGACGTAGAAGGCTGGAAGCACGAGGAAATCGCGGGCGAGCTTGGCATGGCGGTGGGAAGTTCGAAGGCGCAGTTGCATCGCGCGCGCGGACTGCTGCGCGCGCGGATCGGAGAAATGGCATGA
PROTEIN sequence
Length: 191
MLMQTMPLPQATESDDDAGLARRAARADVSAFEQLYRRHHRRVHGVIVRLVGQAGTRAEDLTQEAFVRAWQALPAFRFESAVSTWLHRLAVNTALMEMRARRSRSWPEEDDDALETVATPDTAGRAVLGRDLERAVASLPSRARAVLVLHDVEGWKHEEIAGELGMAVGSSKAQLHRARGLLRARIGEMA*