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scnpilot_solids1_trim150_scaffold_14805_curated_1

Organism: solids_Lysobacter_1

partial RP 26 / 55 MC: 1 BSCG 26 / 51 ASCG 2 / 38
Location: comp(3..1457)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=3 Tax=Xanthomonas albilineans RepID=D2UG12_XANAP similarity UNIREF
DB: UNIREF100
  • Identity: 77.7
  • Coverage: 489.0
  • Bit_score: 730
  • Evalue 8.60e-208
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.3
  • Coverage: 487.0
  • Bit_score: 775
  • Evalue 5.60e-221
rpoD; RNA polymerase sigma-70 factor, rpod protein; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 77.7
  • Coverage: 489.0
  • Bit_score: 730
  • Evalue 2.70e-208

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Taxonomy

Lysobacter dokdonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
ATGGCCAACGAACGGCAGACAGCCCCGCAATCCGACATCAAGCTCCTGATCTCCAAGGGTCTAGAGCAAGGCTATCTGACGTACGCCGAGGTGAACGACCACCTGCCCGACGACATGGTCGATCCGGAGCAGCTGGAAGACATCATCGGCATGATCAACGGCATGGGCATCGAGGTGCACGAGGTTGCGCCCGATGTGGAAACCCTGCTGCTGGCCGGCCAGCAGGCCGGCGGCCGCGAGGTCGACGAAACCGCGGCCGAGGAAGCCGCTGCGGCGCTGACCTCGGTCGACACCGAGGGCGGCCGCACCACCGACCCAGTGCGCATGTACATGCGCGAGATGGGCACGGTGGACCTGCTGACCCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAAGAAGGCCTGGCGCAGATGAACGCCGCGCTGGCCAGCTTCCCCTGGTCCGCCCAGATGCTGCTGGAGGACTGGGAGCTGCACAAGGCCGGCAAGAAGCGCCTCGCCGAGATCGTGGTCGGCTTCAACGACGAGGAGCCGGAACCGGAACCCGCGCCCGTGGTCGCCGAGGTGGATGCCGACGCGGACGTCGAGGAGGACGAGGACGAGGACACCGGCGGCGACGCCGACGAGCCGGCACCGACCGGCCCGGATCCGGCCGAGGTCGCCGCCCGCATGGAGGCGATGGCCGCCGCCTTCGCCCGCTTCGAGAAGGCTTACGCCAAGGGTGGCCCGGACGCCAAGGGCGCGCTGAAGGCGCGCGAGGAGATCGCCGCGATCTTCGTCACCCTGAAGCTGCCGCTGCCGCTGACCGACGCGCTGGTGAAGAAGCTGCGCGAGGCGGTCAACCAGGCGAAGGATCACGAGCGCCGCATCCTCGACCTGTCCACCCGCGTGGCCAAGATGCCGCGCAAGGACTTCATCAAGGCTTGGGAAGGCAACCAGACCAACCTCGAGTGGGTCGACGAACTGCTCAAGCGCAAGCAGAAGTGGGGCAGCGCCCTGCGCGACGTGCGCGAGCAGATCATCGCCGAGCAGGAAGCCACCATCGCGCTGGAGAAGGCGATGCAGGTGACCTTGGCCGACCTCAAGGAAATCAACCGCGCGATGGCCTACGGCGAAGCCAAGGCACGCAAGGCCAAGAAGGAAATGGTCGAGGCCAACCTGCGCCTGGTCATCTCCATCGCCAAGAAGTACACCAACCGCGGCCTGCAGTTCCTCGACCTGATCCAGGAAGGCAACATCGGCCTGATGAAGGCGGTGGACAAGTTCGAGCACCGCCGCGGCTTCAAGTTTTCGACCTACGCGACGTGGTGGATCCGCCAGGCGATCACCCGCTCGATCGCCGACCAGGCGCGCACCATTCGCATCCCGGTGCACATGATCGAGACGATCAACAAGCTCAACCGCATTTCCCGCCAGATGCTCCAGCAGTACGGCCGCGAGGCCACGCCGGAG
PROTEIN sequence
Length: 485
MANERQTAPQSDIKLLISKGLEQGYLTYAEVNDHLPDDMVDPEQLEDIIGMINGMGIEVHEVAPDVETLLLAGQQAGGREVDETAAEEAAAALTSVDTEGGRTTDPVRMYMREMGTVDLLTREGEIAIAKRIEEGLAQMNAALASFPWSAQMLLEDWELHKAGKKRLAEIVVGFNDEEPEPEPAPVVAEVDADADVEEDEDEDTGGDADEPAPTGPDPAEVAARMEAMAAAFARFEKAYAKGGPDAKGALKAREEIAAIFVTLKLPLPLTDALVKKLREAVNQAKDHERRILDLSTRVAKMPRKDFIKAWEGNQTNLEWVDELLKRKQKWGSALRDVREQIIAEQEATIALEKAMQVTLADLKEINRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEHRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGREATPE