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scnpilot_solids1_trim150_scaffold_6395_curated_3

Organism: solids_Micrococcales_1

partial RP 24 / 55 BSCG 24 / 51 MC: 2 ASCG 8 / 38
Location: comp(1164..1829)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-54 n=1 Tax=Microbacterium RepID=UPI00036D9169 similarity UNIREF
DB: UNIREF100
  • Identity: 81.4
  • Coverage: 221.0
  • Bit_score: 362
  • Evalue 3.70e-97
RNA polymerase subunit sigma-54 {ECO:0000313|EMBL:KHK98901.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.9
  • Coverage: 221.0
  • Bit_score: 366
  • Evalue 2.70e-98
ribosome-associated protein Y (PSrp-1) similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 217.0
  • Bit_score: 336
  • Evalue 8.90e-90

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Taxonomy

Microbacterium mangrovi → Microbacterium → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 666
ATGGAAACCAGCATCGTCGGTGTGGGCGTGAGCGTCTCCGATCGGTTCCGCGGTGTGGTGGACGAGAAGGCCACACGCATCGAGAACCTGGCGCCGCGCGCCCAGCAGATGGACGTGAAGGTGACCCACCGTGCGTACCACAACGGGCGCATGGAAGACTCCACAGTCGAACTCACGCTCAGCGGCAAGGGACTGCCCGTGGTGCGGGCAGAGGCCGTGGACGGCGACAAGTTCGCCGCGTTGGACATCGCCGTGGACAAGCTCGCCGAACAGGTGCGCAGAGCCAAGGAGAAGCGCGTCGATGCGCGACGACGTCCGCGCGGCGCGGTGCTGGACAAGGGCACCGGATCGCTCAGCGGCGTCGACCTGCAGCCCGCGTCGGCCGATGTGCTGCGGGCGGTGGCCACCGGGGAGATCCCGATCATCACCGGCCACGAGGACGAAGAGGACTACACCCCCGTCGTCATCCGGACCAAGCGGTTCGAGCCGGAATGGATGACCGTCGAGGATGCCGTGGACCGCATGGAGCTGGTCGGGCACGATTTCTTCCTGTTCATCGACGCGCGCACCGACCATCCCAGCGTGGTCTACCGACGCAAGGGGTGGGACTACGGGGTGATCTCGTTGACCACGCAGGCGCCGCCCTCAGCCGAGCTGGCGTCATAG
PROTEIN sequence
Length: 222
METSIVGVGVSVSDRFRGVVDEKATRIENLAPRAQQMDVKVTHRAYHNGRMEDSTVELTLSGKGLPVVRAEAVDGDKFAALDIAVDKLAEQVRRAKEKRVDARRRPRGAVLDKGTGSLSGVDLQPASADVLRAVATGEIPIITGHEDEEDYTPVVIRTKRFEPEWMTVEDAVDRMELVGHDFFLFIDARTDHPSVVYRRKGWDYGVISLTTQAPPSAELAS*