ggKbase home page

scnpilot_solids1_trim150_scaffold_1000_curated_8

Organism: solids_Nitrosospira_1

near complete RP 51 / 55 BSCG 51 / 51 ASCG 14 / 38
Location: 4116..8189

Top 3 Functional Annotations

Value Algorithm Source
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 97.9
  • Coverage: 999.99
  • Bit_score: 2610
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 999.99
  • Bit_score: 2610
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RPOB_NITMU similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 999.99
  • Bit_score: 2610
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Nitrosospira multiformis → Nitrosospira → Nitrosomonadales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4074
ATGAGTTATTCGTTTACCGAGAAAAAACGTATTCGTAAAAGTTTCGCCAAGCGTGCAAGCGTCTTGCCGATTCCCTTTCTTCTCGCTACGCAAATTGAATCTTACGCTGCTTTCCTGCAAGCCAGTGTCGACCCCGACCAACGCGCTCCGGAGGGGTTGCAAGCCGCCTTTCTGTCGATCTTCCCGATCGAGAGCCATTCCAGGAATGCGCGCCTCGATTTTGTCAATTACGTACTCGGTGCGCCTCCTTTCGATGTGAAGGAGTGTCAACAACGCGGTCTTACCTATGCTTCTCCCCTGCGGGCGAAGGTGCGCTTGACCATTATGGACAAGGAGGCGTCCAAACCAACCGTCAGGGAAGTGAAGGAGCAGGAGGTTTACATGGGCGAAATTCCGCTCATGACGAATACCGGTTCGTTTGTGATTAACGGCACTGAACGCGTGATCGTGTCCCAGTTGCATCGTTCACCCGGAGTGTTTTTCGAGCACGATCGCGGTAAAACGCATTCATCCGGTAAATTGCTTTTTTCCGCCCGTATCATCCCTTACCGTGGTTCCTGGCTTGATTTTGAGTTTGATCCCAAGGATTACCTCTACTTTCGGGTCGACAGGCGTCGCAAAATGCCCATCACCGTGCTGTTGAAGGCCATTGGATACACTCCCGAGCAGATCCTGGAGAGTTTCTTTTCTTTTGATTCTTTCCGCATATCGCGGAAAAGTATTCTTTTTGAACTGTTACCGGAGCGTCTGCGGGGTGATACCGCGCGCTTCGACATCCTGTCGAAAAACGGCAAGGTCATCGTCCAGAAGGACAAGCGCATTACTGTAAAGCATGTGCGCGAAATGCAGCAGGCCGGCATAGACAGGCTTGAGGTGCCGGAAGATTTCCTGCTGGGACGGGTGCTGGGTCACAATGTAGTGGATAAGGAAACGGGAGAGATTCTGGCACTTGCCAATGATGAGATTACGGAAACCTTGCTTGGCAAGTTGCGGGATGCGGATGTGGAAGAGATTCGTACGATTTATACCAATGATCTCGATCAGGGTGCATATATATCGCAAACTCTCAAGATAGATGAAACCGCGGATGAGATGGCGGCGCAGGTTGCGATCTACCGCATGATGCGCCCGGGTGAACCCCCTACTGAGGAAGCAGTCAAAGCGCTCTTCACCGGATTGTTCTATGCCCCTGAACGCTATGACCTCTCAGTGGTCGGGCGAATGAAATTCAATCGCAGGGTTGGTAAGACTGAGTTGGATGGACCGATCACGCTATCCAACGAAGATATCATCGCAGTGATCAGGATTCTGGTGGAACTTCGTAACGGTCGTGGGGAGATTGATGATATCGATCACTTGGGCAATCGTCGCGTACGCTCCGTCGGCGAACTGGCGGAAAACCAGTTTCGCTCCGGCCTGGTGAGGGTTGAGCGAGCGGTGAAAGAGCGCCTGAGCCAGGCTGAATCAGAGAATCTGATGCCGCATGACCTGATCAATGCCAAACCGGTATCTGCGGCGGTGCGTGAATTCTTTGGTTCCAGCCAGTTATCGCAGTTCATGGACCAGACCAATCCGCTCTCTGAAATCACGCACAAACGCCGTGTGTCCGCGCTCGGACCCGGTGGCCTGACGCGTGAGAGGGCGGGGTTTGAGGTGCGTGACGTGCATCCCACTCACTATGGGCGGGTATGTCCGATCGAAACGCCGGAAGGGCCCAACATTGGTTTGATCAACTCGCTGGCGTTATATGCCCAGACCAACGAATACGGCTTTATGGAAACGCCTTATCGCAAGGTAACAAACGGTCTGGTCACTGATGAGATTCATTTTCTTTCAGCCATCGAGGAGGGGCAATATGTAATTGCCCAGGCAAACGCCGAACTGGATGGAGGCGGCAGATTCACCAATGACATCGTTTCCTGTCGCCATAAGAACGAGTTTACCCTGGCGACCCCTGACCGGATTGAATACATGGACGTGGCGCCTGCGCAGATTGTCTCGGTCGCTGCCTCGCTGATTCCCTTTCTGGAGCATGATGACGCCAACCGGGCATTGATGGGCTCCAACATGCAGCGGCAGGCGGTGCCCTGCCTGCGCGCCGAGAAACCCTTGGTCGGAACGGGAATCGAGCGCGTCGTTGCCGTCGACTCCGGCACTGCGGTAAAAGCGGTGCGGGGCGGCGTGGTGGATTATGTTGACGCGGGCCGCATCGTGGTGCGGGTGCATGATGTCGAGACGCGTGCAGGTGAAGTGGGTGTAGACATCTACAACCTCACGAAATATACGCGCTCGAATCAGAACACCAATATCAACCAGCGGCCGCTGGTGAAGGTGGGCGACATGATCGCGCGCGGGGATGTAGTAGCGGATGGTGCCTCCACCGACAAGGGTGAACTTGCGCTGGGACAGAACATGCTGGTCGCGTTTATGCCGTGGACCGGCTACAACTTCGAAGATTCCATTCTCATTTCCGAGCGTATCGTGGCGGATGATCGCTTTACCTCCATTCATATCGAAGAATTGTCGGTGGTAAGCCGCGATACCAAGCTTGGAACCGAAGAAATTACCGGGGATATTTCAAATCTGTCGGAGGCACAGCTTGGTCGTCTGGATGCTTCAGGCATTGTGCATATCGGAGCCGAGGTGGAAGCCGGTGATGTGCTGGTAGGCAAAGTGACACCCAAGGGTGAAACCCAGCTTACGCCGGAAGAAAAACTGTTGCGCGCAATTTTTGGCGAGAAAGCTTCGGATGTGAAGGATACCTCACTGCGTGTGCCATCCGGCATCTCCGGAACGGTGATCGATGTACAGGTCTTCACCCGGGAAGGTATCGAACGGGACAAGCGTGCGCAGCAAATCATTGACGATGAGCTGAAGCGGTATAAGAAAGATCTGGCCGATCAGATGCGGATCGTGGAAGTTGATGCATTTGTCCGGATCGAGCGCCTGCTTATTGGCAAGATTGCCACAGGCGGTCCCAGGAAGCTTGCCAAAGGTGCGGCCATTACCAAGGAATATCTGGAAAGCAACGATCCCCACCATTGGTTTGACATACGTCTGGCAGATGAAGGGGCGAGTGTACAGCTCGAACAGATCGAAGAGGGCCTGGCTCAAAAACGCAAGGCATTCGATGAGGCTTTCGAGGAGAAGAAAAAGAAGCTCACGCAGGGCGACGAGTTGCCTCCAGGCGTGCAGAAAATGGTCAAGGTATACGTCGCGGTGAAGCGGCGCCTTCAGCCCGGGGACAAAATGGCCGGCCGTCATGGCAATAAGGGTGTCATTTCGAAGATCGTGCCAGTGGAGGATATGCCTTATATGGCCGATGGCACCCCCGTGGACGTGGTGCTGAATCCGTTGGGTGTGCCGTCACGCATGAACGTGGGGCAGATCCTGGAGACGCATCTCGGCTGGGCAGCCAAAGGTCTGGGACATAAGATCGGCGAAATGCTGCGCGCAGGCAAGGAGGCCGCGGAGCTTCGCGCCTTTCTTGACAAGATATATAACACCAGTGGAAAACCCGAAGATATTGTCTCCTTGACCGACGGGGAAATCGTGGATCTGGCGGGAAATCTCCAGGATGGAGTGCCCTTTGCCACGCCGGTATTTGATGGCGCCACGGAGCAGGAAATCAAGGACATGCTCGAACTTGCCGGTTTGCCGCGCTCGGGACAGGTGACCCTTTATGATGGCCGTACCGGAGAGGCCTTCGATCGCCCGGTTACCGTCGGTTACATGCATGTATTGAAGCTGCACCACCTGGTGGACGACAAGATGCATGCCCGTTCAACCGGCCCCTACAGTCTGGTCACTCAGCAGCCACTCGGGGGCAAAGCCCAGTTCGGTGGTCAGCGTTTCGGAGAAATGGAGGTGTGGGCACTTGAAGCGTATGGTTCTGCCTATACGCTGCAGGAAATGCTGACAGTCAAGTCGGACGATGTGAACGGGCGCACGAAAGTGTACGAGAGCATTGTGAAGGGCGACCACAAGATCGATGCAGGCATGCCGGAATCCTTCAACGTGCTGGTGAAGGAAATCCGGTCGCTGGCCATGGATATCGACCTGGAGCGGCATTAG
PROTEIN sequence
Length: 1358
MSYSFTEKKRIRKSFAKRASVLPIPFLLATQIESYAAFLQASVDPDQRAPEGLQAAFLSIFPIESHSRNARLDFVNYVLGAPPFDVKECQQRGLTYASPLRAKVRLTIMDKEASKPTVREVKEQEVYMGEIPLMTNTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSWLDFEFDPKDYLYFRVDRRRKMPITVLLKAIGYTPEQILESFFSFDSFRISRKSILFELLPERLRGDTARFDILSKNGKVIVQKDKRITVKHVREMQQAGIDRLEVPEDFLLGRVLGHNVVDKETGEILALANDEITETLLGKLRDADVEEIRTIYTNDLDQGAYISQTLKIDETADEMAAQVAIYRMMRPGEPPTEEAVKALFTGLFYAPERYDLSVVGRMKFNRRVGKTELDGPITLSNEDIIAVIRILVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRSGLVRVERAVKERLSQAESENLMPHDLINAKPVSAAVREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAQTNEYGFMETPYRKVTNGLVTDEIHFLSAIEEGQYVIAQANAELDGGGRFTNDIVSCRHKNEFTLATPDRIEYMDVAPAQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRAEKPLVGTGIERVVAVDSGTAVKAVRGGVVDYVDAGRIVVRVHDVETRAGEVGVDIYNLTKYTRSNQNTNINQRPLVKVGDMIARGDVVADGASTDKGELALGQNMLVAFMPWTGYNFEDSILISERIVADDRFTSIHIEELSVVSRDTKLGTEEITGDISNLSEAQLGRLDASGIVHIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGISGTVIDVQVFTREGIERDKRAQQIIDDELKRYKKDLADQMRIVEVDAFVRIERLLIGKIATGGPRKLAKGAAITKEYLESNDPHHWFDIRLADEGASVQLEQIEEGLAQKRKAFDEAFEEKKKKLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVISKIVPVEDMPYMADGTPVDVVLNPLGVPSRMNVGQILETHLGWAAKGLGHKIGEMLRAGKEAAELRAFLDKIYNTSGKPEDIVSLTDGEIVDLAGNLQDGVPFATPVFDGATEQEIKDMLELAGLPRSGQVTLYDGRTGEAFDRPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGSAYTLQEMLTVKSDDVNGRTKVYESIVKGDHKIDAGMPESFNVLVKEIRSLAMDIDLERH*