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scnpilot_solids1_trim150_scaffold_242_curated

Search features with annotation key words

Displaying items 31-60 of 76 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_242_curated_31
Streptomyces sp. WM6386, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34914..35462)
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00030E5ADA
Sarcosine oxidase subunit gamma {ECO:0000313|EMBL:KKD03119.1}; TaxID=1415558 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. WM6386.;"
sarcosine oxidase gamma subunit
scnpilot_solids1_trim150_scaffold_242_curated_32
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35455..38382)
DNA (2928bp) protein (976aa)
glycine cleavage T protein (aminomethyl transferase); K00302 sarcosine oxidase, subunit alpha [EC:1.5.3.1]
Sarcosine oxidase, alpha subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AEV9_9SPHN
Sarcosine oxidase, alpha subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30856.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_solids1_trim150_scaffold_242_curated_33
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38379..38675)
DNA (297bp) protein (99aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1); K00304 sarcosine oxidase, subunit delta [EC:1.5.3.1]
Sarcosine oxidase delta subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J2GL15_9SPHN
Sarcosine oxidase delta subunit {ECO:0000313|EMBL:EJL30855.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_solids1_trim150_scaffold_242_curated_34
Novosphingobium sp. AP12, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(38685..39938)
DNA (1254bp) protein (418aa)
sarcosine oxidase subunit beta; K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase, beta subunit family, heterotetrameric form n=1 Tax=Novosphingobium sp. AP12 RepID=J3AGF6_9SPHN
Sarcosine oxidase, beta subunit family, heterotetrameric form {ECO:0000313|EMBL:EJL30854.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
scnpilot_solids1_trim150_scaffold_242_curated_35
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(40058..42040)
DNA (1983bp) protein (661aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000381097E
Uncharacterized protein {ECO:0000313|EMBL:CDX35928.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_36
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42244..42921
DNA (678bp) protein (226aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V4U7_SPHWW
TetR family transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
scnpilot_solids1_trim150_scaffold_242_curated_37
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43039..44475
DNA (1437bp) protein (479aa)
RmuC domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH93_9GAMM
RmuC domain-containing protein {ECO:0000313|EMBL:EIL98834.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_38
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44491..44703)
DNA (213bp) protein (71aa)
XRE family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2W9_9GAMM
XRE family transcriptional regulator {ECO:0000313|EMBL:EIL93810.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
XRE family transcriptional regulator; K07729 putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_242_curated_39
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(44700..45344)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2X0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KFL35636.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
scnpilot_solids1_trim150_scaffold_242_curated_40
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45675..46277
DNA (603bp) protein (201aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
GTP cyclohydrolase I n=1 Tax=Dyella japonica RepID=UPI0002D89025
GTP cyclohydrolase I
scnpilot_solids1_trim150_scaffold_242_curated_41
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(46354..47559)
DNA (1206bp) protein (402aa)
ABC transporter sodium permease n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ61_9GAMM
ABC transporter sodium permease {ECO:0000313|EMBL:EIL89352.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ABC-type Na+ efflux pump, permease component
scnpilot_solids1_trim150_scaffold_242_curated_42
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47556..48290)
DNA (735bp) protein (245aa)
Sodium ABC transporter ATP-binding protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WH99_9GAMM
ABC-type Na+ transport system, ATPase component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_43
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48287..49882)
DNA (1596bp) protein (532aa)
Alpha/beta hydrolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WHV1_9GAMM
putative hydrolase or acyltransferase of alpha/beta superfamily
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:AGG87483.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_242_curated_44
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50059..50805)
DNA (747bp) protein (249aa)
Phenol hydroxylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VK93_9GAMM
Phenol hydroxylase {ECO:0000313|EMBL:EIL87634.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
flavodoxin reductase family protein
scnpilot_solids1_trim150_scaffold_242_curated_45
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51233..52168
DNA (936bp) protein (312aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Rhodanobacter denitrificans RepID=M4NDG8_9GAMM
ABC-type multidrug transport system, ATPase component
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_46
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52177..53022
DNA (846bp) protein (282aa)
ABC-type polysaccharide/polyol phosphate export systems, permease component n=1 Tax=Rhodanobacter denitrificans RepID=M4NCJ3_9GAMM
ABC-type polysaccharide/polyol phosphate export systems, permease component
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_242_curated_47
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(53106..54404)
DNA (1299bp) protein (433aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00195365}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammapr
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ71_9GAMM
scnpilot_solids1_trim150_scaffold_242_curated_48
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54644..55090
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHB5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98856.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_49
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55275..55445
DNA (171bp) protein (57aa)
UPF0391 membrane protein UU9_10022 n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ74_9GAMM
Protein of unknown function (DUF1328)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_50
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55508..57379
DNA (1872bp) protein (624aa)
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WHB8_9GAMM
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
scnpilot_solids1_trim150_scaffold_242_curated_51
unknown

Not on your lists

57376..57498
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_242_curated_52
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

57485..58108
DNA (624bp) protein (208aa)
DedA protein family n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VQ76_9GAMM
putative membrane-associated protein
DedA protein family {ECO:0000313|EMBL:EIL89367.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_242_curated_53
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

58191..58823
DNA (633bp) protein (211aa)
Glutathione S-transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCJ3_9GAMM
glutathione S-transferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_242_curated_54
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58882..59457)
DNA (576bp) protein (192aa)
Relaxation protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR86_9GAMM
Relaxation protein {ECO:0000313|EMBL:EIL89727.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Hypothetical Protein
scnpilot_solids1_trim150_scaffold_242_curated_55
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59532..60950)
DNA (1419bp) protein (473aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR87_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89728.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_56
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(60965..61567)
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR88_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL89729.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_242_curated_57
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61749..62138
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMK5_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL88446.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Protein of unknown function (DUF2384)
scnpilot_solids1_trim150_scaffold_242_curated_58
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62309..62995
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCJ9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97190.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
RES domain-containing protein
scnpilot_solids1_trim150_scaffold_242_curated_59
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63063..63950)
DNA (888bp) protein (296aa)
Phenylalanine 4-monooxygenase {ECO:0000313|EMBL:EIL88440.1}; EC=1.14.16.1 {ECO:0000313|EMBL:EIL88440.1};; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Phenylalanine 4-hydroxylase (EC:1.14.16.1)
Phenylalanine 4-monooxygenase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VMJ9_9GAMM
scnpilot_solids1_trim150_scaffold_242_curated_60
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

64086..64577
DNA (492bp) protein (164aa)
AsnC family transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCK3_9GAMM
transcriptional regulator
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 31-60 of 76 in total

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