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scnpilot_solids1_trim150_scaffold_2016_curated_2

Organism: solids_Rhodanobacter_4

partial RP 24 / 55 MC: 2 BSCG 23 / 51 MC: 2 ASCG 9 / 38
Location: 900..1241

Top 3 Functional Annotations

Value Algorithm Source
Conjugal transfer protein TrbC n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP27_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 92.9
  • Coverage: 113.0
  • Bit_score: 201
  • Evalue 4.30e-49
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EIM01219.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.9
  • Coverage: 113.0
  • Bit_score: 201
  • Evalue 6.00e-49
trbC; putative conjugal transfer protein; K03197 type IV secretion system protein VirB2 similarity KEGG
DB: KEGG
  • Identity: 76.8
  • Coverage: 112.0
  • Bit_score: 154
  • Evalue 2.50e-35

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Taxonomy

Rhodanobacter thiooxydans → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 342
ATGATGCGAACCCACCTTTACGACGATCCGCTTTTCCGTAAAGCCCTGCCTTGGCTGCTGCTCCTGCTGATGTGCCTGGCGGCAACGGCCGCGCGCGCGGCCGGCTCGAACATGCCGTGGGAAGCACCGCTGCAATCCATCCTCGACTCGATCCAGGGACCGGTCGCCAAGATCATCGCGGTCATCATCATCATCGTGACCGGCCTCACGCTCGCCTTCGGCGACACCAGCGGCGGCTTCCGGCGGCTGATCCAGATCGTGTTCGGATTATCGATCGCGTTCGCCGCGTCGAGCTTTTTCCTCTCGTTCTTCTCGTTCTCCGGCGGCGCGGTGGTGGCATGA
PROTEIN sequence
Length: 114
MMRTHLYDDPLFRKALPWLLLLLMCLAATAARAAGSNMPWEAPLQSILDSIQGPVAKIIAVIIIIVTGLTLAFGDTSGGFRRLIQIVFGLSIAFAASSFFLSFFSFSGGAVVA*