ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

scnpilot_solids1_trim150_scaffold_9220_curated_5

Organism: solids_Rhodanobacter_5

partial RP 37 / 55 MC: 2 BSCG 37 / 51 MC: 2 ASCG 10 / 38
Location: 3675..5600

Top 3 Functional Annotations

Value Algorithm Source
Mechanosensitive ion channel MscS n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6D2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 92.7
  • Coverage: 643.0
  • Bit_score: 1137
  • Evalue 0.0
Mechanosensitive ion channel MscS {ECO:0000313|EMBL:EIL95023.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.7
  • Coverage: 643.0
  • Bit_score: 1137
  • Evalue 0.0
small-conductance mechanosensitive channel similarity KEGG
DB: KEGG
  • Identity: 77.3
  • Coverage: 644.0
  • Bit_score: 941
  • Evalue 1.70e-271

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1926
ATGTCCAGACTGCCTCGCCTCGCCTTCTCCCTCCTGCTGATCTTCGGTGCTGCCACCCTGCATGCGCAGGACAGTGCCGCGCCCGATACCGCGGCGGTATCGCCGGCACAGGCGCTGGACCAGCTGGGCAGCCAGCTCGACGAAGTGAAGCTTGCCCTGAAGAACCCCACACCCGATGCGCCGCTGGCCGACCTGCGCAGCACCGCGCTGGCCGTGCAGGATCAGTCGCGCCAGCTCACCGCCAGTCTCGCGCCGCAGATGACCGCCTTGCAGGCCCAACTGGCGGTGCTGGGTCCGGCGCCGGCGAAGGGAGCGCCGGTCGAAGCGCCGGAAGTTGCCGCGCAACGCCGGAAGCTGGACAAGGCGCAGGCCGACCTCGACGCGCAGATCAAGCAGTCGCAACTGCTCAACCAGAACGCGATGCAGCTGGCCGCGCAGATCACCGGCCTGCGCAACGACCAGTTCCAGGCGCGACTGGCCTCGCGCACGCCCACGCCATTCAGCCGTGCGTTCTGGGCTGGCCCCGTGCGCACCTTTCCCGATGACCTGGTGCGCCTGAAGCGCCTGGGCACGCGCTTCACCGCGGCAGTCAACGATGCCTGGCAACCGCCGAACCGGCAGCCGCTGCTGTGGTGCCTGGCCGCGGCCGTGCTGCTGCTGGCCGGCGGTCGCTGGGTGCTGGAGCGCCTGCTGCTGGCGCTGGCCGCCCGCCATGTGCCGGACGGACACCTGCGGCGCAGCGCGATGGCCACCGCGGTGGCGCTGACTGCCGTGCTGACGACCGGGCTCGCCGCCCAGCTGGCCTACACGGGACTGAACTGGAACGACGTTCTCGACGACGACACGCAAAATCTGATGACGTCCCTGGTGCGGCTGGTCTGCCTGGCCGCCTTCATCACCGGGCTGGGTCGCGCCCTGCTGTCGGTACGGCGTCCTTCCTGGCGTTTGCCCGCGCTGTCGGACCTCACCGCGCAATGGCTGCAGCCGTTTCCGTGGCTGCTTGCCGCCGCAGCATTGCTGGCCGGAATGGTCGAGCGCACCACCCGCACGATCGGCACCAGCCTGCCCGCCACCGTGGCCACCCGGGGACTGTTCGCCCTGGTCATCAGCGGGCTGATCGGCGCGGCGTTGTGGCGCCTGCGCCGCAGCCGCAGCGAACTGGCCCGGGACGGCGGCGAGCCCGTGCAGCGACCGGTGTGGGTCAGCCTGCTGGTTGCGGCGGCCTCGCTCGGCGTGGTGGTCAGCTGGCTGTGCGTGGCCACCGGCTTCATCGCGATGGCCTTCTTCCTAGCCAGGCAGATGCTGTGGGTCGGCCTGATCTTCGCCACCACCTACCTGCTGGTCCATTTGCTGACCGACCTGATCAACACCTTGCTGTCGCCACGCGGGCGGGGCGGCCAGCAGTTGCAGGCCAGCCTGACCCTGCCGTCGCACAAGCTGGAACAGGCCAACGTGCTGCTGGTGGGCATCGTGCGCGTGGGCCTGGTGCTGGTGGCGCTGGCCACCGTGCTCACCCCGTTCGGCGCCGGTCCGGGCGACCTGCTGGTCAGCGCCCGGCAGACCCTGGGCAACCTGAAGCTGGGCGAGCTGGCGATCAACCCGGCCAGCATCATCACCGCCGTACTGGTGCTGCTGGCTGGCGTGCTGGTGCTGCGCGTGCTCAAGCGCTGGCTGCGCGAGCAGTTGCTGCCCAAGTCGGCGATGGATCGGGGCATGCAGGAATCCATCACCACCCTGCTCGGCTATCTCGGCGGGCTGCTGGTGGTGGTGCTGACCCTGGCCGCACTGCAGGTGGATCTCAAGAGCATCGCCTGGATCGTCAGCGCGCTGTCGGTGGGCATCGGCTTCGGCCTGCAGGCGATCGTGCAGAACTTCATCTCCGGCCTGATCCTGCTGGTCGAGCGGCCGGTGAAGGTGGGCGACTGG
PROTEIN sequence
Length: 642
MSRLPRLAFSLLLIFGAATLHAQDSAAPDTAAVSPAQALDQLGSQLDEVKLALKNPTPDAPLADLRSTALAVQDQSRQLTASLAPQMTALQAQLAVLGPAPAKGAPVEAPEVAAQRRKLDKAQADLDAQIKQSQLLNQNAMQLAAQITGLRNDQFQARLASRTPTPFSRAFWAGPVRTFPDDLVRLKRLGTRFTAAVNDAWQPPNRQPLLWCLAAAVLLLAGGRWVLERLLLALAARHVPDGHLRRSAMATAVALTAVLTTGLAAQLAYTGLNWNDVLDDDTQNLMTSLVRLVCLAAFITGLGRALLSVRRPSWRLPALSDLTAQWLQPFPWLLAAAALLAGMVERTTRTIGTSLPATVATRGLFALVISGLIGAALWRLRRSRSELARDGGEPVQRPVWVSLLVAAASLGVVVSWLCVATGFIAMAFFLARQMLWVGLIFATTYLLVHLLTDLINTLLSPRGRGGQQLQASLTLPSHKLEQANVLLVGIVRVGLVLVALATVLTPFGAGPGDLLVSARQTLGNLKLGELAINPASIITAVLVLLAGVLVLRVLKRWLREQLLPKSAMDRGMQESITTLLGYLGGLLVVVLTLAALQVDLKSIAWIVSALSVGIGFGLQAIVQNFISGLILLVERPVKVGDW