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scnpilot_solids1_trim150_scaffold_9199_curated_5

Organism: solids_Sphingopyxis_1

partial RP 38 / 55 BSCG 38 / 51 MC: 1 ASCG 4 / 38
Location: comp(3378..3755)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GUH6_SPHAL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 125.0
  • Bit_score: 244
  • Evalue 6.40e-62
RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 125.0
  • Bit_score: 244
  • Evalue 2.00e-62
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 125.0
  • Bit_score: 244
  • Evalue 8.90e-62

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Taxonomy

Sphingopyxis sp. LC363 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 378
ATGCCGCTCGAAAAGGTCCGCAAGGTGATGAAGATCGCCAAGGAGCCGATCAGCCTCGAAACGCCGATCGGCGACGAGGAAGACAGCCATCTCGGCGATTTCATCGAGGACAAGAACGCGGTCATCCCGGTCGACGCCGCGGTGCAGTCGAACCTCAAGGAAACGGTTACGCGAGTTTTGGCCTCGCTTACGCCGCGTGAAGAGCGTGTTCTCCGCATGCGCTTCGGCATCGGCATGAACACCGACCATACCCTTGAAGAGGTCGGCCAGCAGTTCAGCGTGACGCGCGAACGTATCCGCCAGATCGAGGCGAAGGCGCTGCGCAAGCTCAAGCATCCGAGCCGCAGCCGCAAGATGCGCAGCTTCCTCGACCAATAG
PROTEIN sequence
Length: 126
MPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSNLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ*