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scnpilot_solids1_trim150_scaffold_22432_curated_2

Organism: solids_Sphingopyxis_2

partial RP 29 / 55 BSCG 30 / 51 MC: 1 ASCG 8 / 38 MC: 1
Location: 521..1105

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=2 Tax=Sphingopyxis RepID=Q1GQE1_SPHAL similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 194.0
  • Bit_score: 381
  • Evalue 6.70e-103
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 194.0
  • Bit_score: 381
  • Evalue 2.10e-103
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABF54131.1}; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 194.0
  • Bit_score: 381
  • Evalue 9.40e-103

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Taxonomy

Sphingopyxis alaskensis → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 585
GTGAGCGCCGACCTATCGCAATGTAGCGACCAGGATCTGGCGGCCTTTGCGCGCGCGCACCGCGAAGACGCCTATCGCGAGTTGCTGCGCCGTTACAAAACGGGCGTCTACCGGCTCATCGTAAAGCAGATCGGCGATGCCGACGAGGCGATGGATTTGACGCAGGAGACGTTCGTCTCCGGCTTTTCGGCGCTCGATCGCTATGATGGCGAACGCCCCTTCCGCACATGGATCGCCCGTATCGCGCTCAACAAATGTCGCGACTGGGCACGACGGCGAAAGGTGCGCGCCTTTTTCTCCCGCGCGCTCCCGCTCGAAAATGCGCATCACGTAGCAAGCGATGGTCCTGGGCCCGATTCCGCGGCGACCGACAGGCGAGAGCTCGCCAGGGTTCGCGGGGCGATCGATCAGCTGCCGCAGAATTTGCGCGAAGTGTTGCTCCTCCGCGGTGTCGACGAGGTCAGCCAGGCCGAAACAGCGGTCATTTTGCGGGTCAGCGAGAAAACAGTCGAAACGCGCCTCTATCGAGCGCGGACCAGGCTCCGGGAATTGCTCGCGGGAACATCTGCGAGCGCCGAGGGTTGA
PROTEIN sequence
Length: 195
VSADLSQCSDQDLAAFARAHREDAYRELLRRYKTGVYRLIVKQIGDADEAMDLTQETFVSGFSALDRYDGERPFRTWIARIALNKCRDWARRRKVRAFFSRALPLENAHHVASDGPGPDSAATDRRELARVRGAIDQLPQNLREVLLLRGVDEVSQAETAVILRVSEKTVETRLYRARTRLRELLAGTSASAEG*