ggKbase | organisms

Consensus taxonomy: Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_68_7

Properties

Avg. coverage: 1.00 Longest contig: 11.62 Kbp Bin length: 1.44 Mbp GC content: 66.44 %

Contigs count: 641 Features count: 1838 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 29 / 55 BSCG 30 / 51 MC: 1 ASCG 8 / 38 MC: 1

Displaying items 451-500 of 641 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_solids1_trim150_scaffold_30464_curated Species: Sphingopyxis sp. MC1 (50%)	2	1072 bp	66.32	1.00	100.19
scnpilot_solids1_trim150_scaffold_39427_curated Species: Sphingopyxis sp. MC1 (100%)	2	1028 bp	69.36	1.00	100.39
scnpilot_solids1_trim150_scaffold_29279_curated Species: Sphingopyxis sp. LC81 (50%)	2	1337 bp	62.53	1.00	46.90
scnpilot_solids1_trim150_scaffold_25124_curated Species: Sphingopyxis sp. MC1 (50%)	2	1494 bp	66.53	1.00	79.52
scnpilot_solids1_trim150_scaffold_14900_curated Species: Sphingopyxis sp. MC1 (50%)	2	2169 bp	57.35	1.00	56.98
scnpilot_solids1_trim150_scaffold_24979_curated Species: Sphingopyxis alaskensis (50%)	2	1500 bp	66.33	1.00	100.60
scnpilot_solids1_trim150_scaffold_36944_curated Species: RHI_Sphingopyxis_65_19 (50%)	2	1128 bp	62.68	1.00	27.66
scnpilot_solids1_trim150_scaffold_31296_curated Species: Sphingopyxis sp. LC363 (50%)	2	1235 bp	67.61	1.00	85.02
scnpilot_solids1_trim150_scaffold_14909_curated Species: Sphingopyxis fribergensis (50%)	2	2169 bp	65.74	1.00	106.64
scnpilot_solids1_trim150_scaffold_19930_curated Species: Sphingopyxis sp. LC363 (50%)	2	1664 bp	66.83	1.00	94.29
scnpilot_solids1_trim150_scaffold_11451_curated Species: Sphingopyxis alaskensis (50%)	2	1244 bp	70.42	1.00	93.33
scnpilot_solids1_trim150_scaffold_36541_curated Species: Sphingopyxis sp. MC1 (100%)	2	1105 bp	69.86	1.00	92.85
scnpilot_solids1_trim150_scaffold_41940_curated Species: Sphingopyxis sp. LC81 (50%)	2	975 bp	65.33	1.00	89.85
scnpilot_solids1_trim150_scaffold_34567_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1157 bp	59.20	1.00	73.90
scnpilot_solids1_trim150_scaffold_31456_curated Species: Sphingopyxis sp. MC1 (50%)	2	1200 bp	65.50	1.00	92.50
scnpilot_solids1_trim150_scaffold_31455_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1264 bp	68.83	1.00	86.63
scnpilot_solids1_trim150_scaffold_21140_curated Species: Sphingopyxis sp. LC363 (50%)	2	1690 bp	66.75	1.00	88.93
scnpilot_solids1_trim150_scaffold_25108_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (50%)	2	1495 bp	64.01	1.00	88.50
scnpilot_solids1_trim150_scaffold_43077_curated Species: Sphingopyxis sp. MC1 (50%)	2	1022 bp	63.80	1.00	90.12
scnpilot_solids1_trim150_scaffold_20328_curated Species: Sphingopyxis sp. MC1 (100%)	2	1480 bp	67.30	1.00	68.11
scnpilot_solids1_trim150_scaffold_31289_curated Species: Sphingopyxis alaskensis (50%)	2	1208 bp	64.40	1.00	96.36
scnpilot_solids1_trim150_scaffold_27276_curated Species: Sphingopyxis fribergensis (50%)	2	1392 bp	65.01	1.00	99.78
scnpilot_solids1_trim150_scaffold_29254_curated Species: Sphingopyxis sp. LC363 (50%)	2	1125 bp	67.02	1.00	100.27
scnpilot_solids1_trim150_scaffold_9005_curated Species: BJP_08E140C01_10KDA_Sphingopyxis_64_55 (100%)	2	3055 bp	69.53	1.00	96.82
scnpilot_solids1_trim150_scaffold_26887_curated Species: Sphingopyxis sp. MC1 (50%)	2	1423 bp	65.92	1.00	86.02
scnpilot_solids1_trim150_scaffold_29580_curated Species: Mastigocladus laminosus (50%)	2	1225 bp	63.35	1.00	76.16
scnpilot_solids1_trim150_scaffold_29953_curated Species: Sphingopyxis sp. LC81 (50%)	2	1316 bp	65.50	1.00	95.06
scnpilot_solids1_trim150_scaffold_43501_curated Species: Sphingopyxis sp. MC1 (100%)	2	959 bp	68.40	1.00	100.42
scnpilot_solids1_trim150_scaffold_12017_curated Species: Sphingopyxis sp. MC1 (50%)	2	2381 bp	69.34	1.00	94.25
scnpilot_solids1_trim150_scaffold_26905_curated Species: Sphingopyxis fribergensis (50%)	2	1422 bp	65.61	1.00	90.51
scnpilot_solids1_trim150_scaffold_22539_curated Species: Sphingopyxis sp. LC81 (50%)	2	1606 bp	59.53	1.00	61.08
scnpilot_solids1_trim150_scaffold_27421_curated Species: Sphingopyxis alaskensis (100%)	2	1206 bp	65.51	1.00	68.16
scnpilot_solids1_trim150_scaffold_32967_curated Species: Sphingopyxis sp. MC1 (50%)	2	1201 bp	65.03	1.00	84.93
scnpilot_solids1_trim150_scaffold_17652_curated Species: Sphingopyxis sp. MC1 (50%)	2	1918 bp	68.67	1.00	97.13
scnpilot_solids1_trim150_scaffold_26829_curated Species: Sphingopyxis alaskensis (50%)	2	1368 bp	66.59	1.00	81.14
scnpilot_solids1_trim150_scaffold_30490_curated Species: Sphingopyxis sp. MC1 (100%)	2	1213 bp	68.43	1.00	89.78
scnpilot_solids1_trim150_scaffold_19098_curated Species: Sphingopyxis sp. MC1 (100%)	2	1815 bp	67.82	1.00	98.35
scnpilot_solids1_trim150_scaffold_10518_curated Species: Sphingopyxis sp. LC81 (50%)	2	2782 bp	70.70	1.00	91.12
scnpilot_solids1_trim150_scaffold_12280_curated Species: Sphingopyxis sp. MC1 (100%)	2	2419 bp	65.81	1.00	96.24
scnpilot_solids1_trim150_scaffold_24010_curated Species: Sphingopyxis sp. LC363 (50%)	2	1421 bp	71.22	1.00	98.38
scnpilot_solids1_trim150_scaffold_19097_curated Species: Sphingopyxis alaskensis (50%)	2	1753 bp	69.88	1.00	96.69
scnpilot_solids1_trim150_scaffold_10479_curated Species: RHI_Gammaproteobacteria_63_22 (50%)	2	2791 bp	63.81	1.00	63.42
scnpilot_solids1_trim150_scaffold_37709_curated Species: Sphingopyxis sp. LC81 (50%)	2	951 bp	65.62	1.00	98.42
scnpilot_solids1_trim150_scaffold_41007_curated Species: Sphingopyxis macrogoltabida (100%)	2	799 bp	63.20	1.00	64.58
scnpilot_solids1_trim150_scaffold_25428_curated Species: Sphingopyxis sp. MC1 (50%)	2	1482 bp	69.70	1.00	96.15
scnpilot_solids1_trim150_scaffold_19256_curated Species: Sphingopyxis sp. LC363 (50%)	2	1778 bp	70.70	1.00	93.14
scnpilot_solids1_trim150_scaffold_19706_curated Species: Sphingopyxis fribergensis (100%)	2	1775 bp	69.41	1.00	96.00
scnpilot_solids1_trim150_scaffold_40136_curated Species: Sphingopyxis sp. LC363 (50%)	2	1061 bp	65.13	1.00	73.52
scnpilot_solids1_trim150_scaffold_19250_curated Species: Sphingopyxis sp. MC1 (50%)	2	1789 bp	68.87	1.00	94.91
scnpilot_solids1_trim150_scaffold_20234_curated Species: Sphingopyxis sp. MC1 (50%)	2	1745 bp	66.99	1.00	91.63

Displaying items 451-500 of 641 in total

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

solids_Sphingopyxis_2

SCNPILOT_SOLID_1_TRIM150_Sphingopyxis_66_1

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Processing

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