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scnpilot_solids1_trim150_scaffold_109_curated_81

Organism: solids_Stenotrophomonas_1

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: comp(104950..105579)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036222A5 similarity UNIREF
DB: UNIREF100
  • Identity: 74.6
  • Coverage: 173.0
  • Bit_score: 257
  • Evalue 9.30e-66
RNA polymerase sigma factor nccH {ECO:0000313|EMBL:CCP15388.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.3
  • Coverage: 173.0
  • Bit_score: 238
  • Evalue 8.20e-60
putative RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 71.8
  • Coverage: 174.0
  • Bit_score: 237
  • Evalue 3.10e-60

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Taxonomy

Stenotrophomonas maltophilia → Stenotrophomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 630
ATGCTTCCCGCCGGCGCCGTGCTGCGTACACTCTCCGGCACACTTCGCTTCCGGATACTCCGACTGTCCGCTTCCCGTGCCCCGGTCGATGGCGTCACGCGCGCCCCTGCCGGCGATGGCTTCTCGCTGTTCCTGCGCACGCAGCGCGAGCCGCTGCGCGTCTTCCTGCGCGCGCGCGGCGCCAGTGAGGAGGACGCCGAGGACATCGTGCAGGACTGCATGGAGCGGCTGATCCGCTACCGCGAGCATCCGCACGCGGAACTGAAACTGCTGCTGTACCGGATCGCGCGCAACCGCCTGGCCGACCGCGGCCGCTCGCCACACGCCGCGCCGCACCTGCCACTGGCCGAACAGGACCTGCCGAGCGAAGCGCCGTTCTCCACGCCCGGGCCGCTGCGCCAGGCCGAATCGGGACAGATGCTCAACGCCCTGCGCCAGGCGCTGCTGAAACTGCCCGAGCGCTGCCGCGAGGTCTACCTGCTCAACCGCATCACCGGCATGAGCTACAGCCAGATCGCCCGCCACCGCGGCATCACCGCCAAGACCGTGGAAAAGCACGTCGCGCGTGCGCTGCAGGGGCTGCGCCGGGAACTGGGGGCCGACGCGTTCGGCATGGGCGGGGACGAATGA
PROTEIN sequence
Length: 210
MLPAGAVLRTLSGTLRFRILRLSASRAPVDGVTRAPAGDGFSLFLRTQREPLRVFLRARGASEEDAEDIVQDCMERLIRYREHPHAELKLLLYRIARNRLADRGRSPHAAPHLPLAEQDLPSEAPFSTPGPLRQAESGQMLNALRQALLKLPERCREVYLLNRITGMSYSQIARHRGITAKTVEKHVARALQGLRRELGADAFGMGGDE*