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scnpilot_solids1_trim150_scaffold_3333_curated_2

Organism: solids_Xanthomonadales_2

partial RP 17 / 55 MC: 2 BSCG 18 / 51 MC: 2 ASCG 7 / 38
Location: comp(304..3816)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.6
  • Coverage: 999.99
  • Bit_score: 1794
  • Evalue 0.0
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 77.6
  • Coverage: 999.99
  • Bit_score: 1770
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TP00_STEMA similarity UNIREF
DB: UNIREF100
  • Identity: 78.3
  • Coverage: 999.99
  • Bit_score: 1773
  • Evalue 0.0

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Taxonomy

Lysobacter daejeonensis → Lysobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3513
ATGGCGTCCGGCGCGGGCGCGTTTTCCATGCCTGATCTGCTGCTGCAAGCCCCCGTCCCCATGCCGCGCCCCGGCCAGCAACGCGCCTGGTGGCGCGCCCCCGCTTCCGGCACTGCCCTGGCCGCCGCCGCGCTGGCTGCGGCCCAGCGCGCCGATGGCCCGCTGCTGCTGGTGGCGCGCGACAACCACGCCGCGCACCAGCTGGAAGCCGACCTGCGCACGCTCACCGGCGGCGATCCCGCACTGCCGGTGCTGGGCTTCCCGGACTGGGAGACGCTGCCGTTCGACCGCTTCAGCCCGCACCCGGAAATCGTCAGCCAGCGCCTGGCCACGCTGGCGCGGCTGCCCGAGCTCAAGCGCGGCCTGGTGATCGTGCCGGCGGCCACCCTGATGCAGCGGCTGGCCCCGCGCGGGCATGTGCTGGGCAACCGCTTCAGCGTGCGGCTGGGCCAGCGCATGGACATGGACGCGGAGAAGCGCCGGCTGGAATCGGCCGGCTACCGCAACGTGCCGCAGGTTTTCGACCCCGGCGATTTCGCGGTGCGCGGCGGCCTGCTGGACGTGTACCCGATGGGCGCCGACGCGCCGTTCCGGGTGGAGCTGCTGGACGACGAGATCGACAGCATCCGCGCCTTCGACCCGGAGTCGCAGCGATCGCTGGACAGGATCGACGCGATCGAGCTGCTGCCCGGCCGCGAAGTGCCGATGGACGATGCCCATGTGCAGCGCGCGCTGGAAGCGCTGCGCGAACGCTTCGACATCGACACCCGGCGCAGCGCGCTGGTGCAGGACCTCAAGGCCGGGCTGGCGCCGGCCGGCGTGGAGTACTACCTGCCGCTGTTCTTCGCCGCGCAGCGCGGCGGCGCCGGCAGCACGGAAACCCTGTTCGACTACCTCGGCACGAACGCGCTGCCGCTGGTCTGCGACGGCGCGCTGGAAGCCGCCGAGCACGCCTGGAAGCAGATCGGCGAGCGTTTCGAGCAGTTGCGCCACGACATCGAACGCCCGCTGCTGCCGCCGGCCGAGCTGTGGCTGTCGCCGGATGCGCTGCGGGAAACCCTGAACCGCTTCGAGCGCATCGAAGTCTGCGGCGCCGAGCACCCGCGCCATGGCGATGCGCAGCCGCTGCCGGTGCAGCCGGCGCCGGCGCTGCCGTTGACCGTGAAGGACCAGCCTGCGGGGCAGGCACTGCGTGATTTCCTGTCGAGCTATCCCGGCCGCGTGCTGGTAGCCGCGGATTCCGCCGGCCGCCGCGAGGCGCTGCTGGAAGTGCTGCAGGCGGCAGGGTTGAAACCGGTGGTGAGTGAAAACTGGCCGGCCTTCGCCGCCAGCGACACCCGCTTCGCCATCACCGTCGCCCCGTTCGACGACGGCTTCGCGCTCGACGCCCCGCAAACGGCCGTCCTGACCGAACGCCAGCTGTTCCCCGAGCGCGCCTTGCAGCCGCGCCGTCGCAGGCGCGCGGGACGCGAACCGGAAGCGATCATCCGCGACCTCGGCGAGCTGACCCAGGGCGCGCCGATCGTCCACGAGGATCACGGCGTCGGCCGCTACCGCGGGCTGGTGGCGATGGACGTCGGCGGCATGCCCGGCGAATTCCTCGACATCGAATACGCCAAGGGCGACCGCCTGTACGTGCCGGTGGCGCAGCTGGACCGCATCAGCCGCTATTCCGGCGCCAACCCCGACACCGCGCCGCTGCACAACCTTGGCGGCGAGCAGTGGGCGAAGGCGAAGAAGAAGGCCGCCGACAAGGTCCGTGACGTTGCCGCCGAGCTGCTGGAGATCCAGGCAAAGCGCCATGCACGGCAGGGCCTGGCCATCGACGTGGACCGGGCGATGTACGAACCGTTCGCCGCCACGTTCCCGTTCGAGGAAACCCCCGACCAGCACGCCGCCATCGAAGCGGTGCTGCGCGACCTAGCCTCCTCGCAGCCGATGGACCGCGTGGTCTGCGGCGACGTCGGCTTCGGCAAGACCGAGGTCGCGGTGCGCGCCGCCTTCGCCGCCGCCAGCAGCGGCAAGCAGGTCGCGGTGCTGGTGCCGACCACCCTGCTGGCCGAGCAGCACTACCGCAACTTCCGCGACCGCTTCGCCGACTGGCCGCTGAAGGTGGAAGTGCTGTCGCGCTTCAAGTCGAAGAAGGAAATCGAAGCGGAACTGCAGAAGCTGGCCGAAGGCAAGCTCGACGTGATCGTCGGTACCCACCGCCTGCTGCAGCCGGACGTGAAGTTCAGCGACCTGGGCCTGGTCATCGTCGACGAGGAACAGCGCTTCGGCGTGCGCCAGAAGGAAGCGCTGAAGAAGCTGCGCGCCAACGTGCACCTGCTCACCCTGACCGCCACGCCCATTCCGCGCACCCTGAACATGGCGATGAGCGGACTGCGCGACCTGTCGATCATCGCCACCCCGCCGGCCAACCGGCTGGCGGTGCAGACCTTCGTCCACGTCTGGGACGACGCGCTCCTGCGCGAGGCCTTCCAGCGCGAACTGGCCCGCGGCGGCCAGGTGTATTTCCTGCACAACGACGTCGAGAGCATCGGCCGCATGCACGACGAGCTGCAGGCGCTGGTGCCGGATGCGCGCATCGGGATTGCGCACGGGCAGATGCACGAGCGCGAGCTGGAGCGGGTGATGCTGGACTTCCACAAGCAGCGCACCAACGTGCTGCTGTGCTCCACCATCATCGAATCCGGCATCGACATCCCCAATGCCAACACCATCCTGATCAACCGCGCCGACAAGTTCGGCCTGGCCCAGCTGCACCAGCTGCGCGGCCGCGTGGGCCGCAGCCACCATCGCGCCTACGCCTACCTCCTCGTGCCGGACGGGCGCAGCATCACCCCGGATGCGAAGAAGCGGCTGGAGGCGATCAGCTCGATGGACGAACTGGGCGCCGGCTTCACCCTGGCCACCCACGACCTGGAAATCCGCGGCGCCGGCGAACTGCTGGGCGAAGACCAGAGCGGTCAGATGGCGGAAGTCGGCTTCAGCCTCTACACCGAGCTGCTGGAGCGCGCGGTCAAGTCGATCAAGCAGGGCAGGATCCCCGACGTGGACGACACCGACCGCTTCGGCGCCGACGTGGACCTGCACGTGCCGGCGCTGATCCCGGACGACTACCTGCCCGACCCGCACGCACGCCTGACCCTGTACAAGCGCATCAGTGCCGCCCGCGATGGCAATGCGCTGCGCGAGCTGCAGGTGGAGATGATCGACCGCTTCGGCCTGCTGCCGGATGCCACCAAGCACCTGTTCGCCACCGCCGAGCTGAAACTGGATGCAACGCGGCTCGGCATCCGCAAGCTCGACCTGGGCGGCAGCGGCGGGCGCATGCAGTTCGTCGAAAAACCCGCGGTCGATCCGATGGCGGTGATCCGGCTGATCCAAGGCCAGCCCAAGCACTACCGCATGGATGGCCCGGACAAGCTGCGCATCACCCTGGTGCTGCCGGACGCGGCCACGCGCTTCAGCGCCGCGCGTGGTCTGCTGACGGCGCTGCAACCGGGATAG
PROTEIN sequence
Length: 1171
MASGAGAFSMPDLLLQAPVPMPRPGQQRAWWRAPASGTALAAAALAAAQRADGPLLLVARDNHAAHQLEADLRTLTGGDPALPVLGFPDWETLPFDRFSPHPEIVSQRLATLARLPELKRGLVIVPAATLMQRLAPRGHVLGNRFSVRLGQRMDMDAEKRRLESAGYRNVPQVFDPGDFAVRGGLLDVYPMGADAPFRVELLDDEIDSIRAFDPESQRSLDRIDAIELLPGREVPMDDAHVQRALEALRERFDIDTRRSALVQDLKAGLAPAGVEYYLPLFFAAQRGGAGSTETLFDYLGTNALPLVCDGALEAAEHAWKQIGERFEQLRHDIERPLLPPAELWLSPDALRETLNRFERIEVCGAEHPRHGDAQPLPVQPAPALPLTVKDQPAGQALRDFLSSYPGRVLVAADSAGRREALLEVLQAAGLKPVVSENWPAFAASDTRFAITVAPFDDGFALDAPQTAVLTERQLFPERALQPRRRRRAGREPEAIIRDLGELTQGAPIVHEDHGVGRYRGLVAMDVGGMPGEFLDIEYAKGDRLYVPVAQLDRISRYSGANPDTAPLHNLGGEQWAKAKKKAADKVRDVAAELLEIQAKRHARQGLAIDVDRAMYEPFAATFPFEETPDQHAAIEAVLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASSGKQVAVLVPTTLLAEQHYRNFRDRFADWPLKVEVLSRFKSKKEIEAELQKLAEGKLDVIVGTHRLLQPDVKFSDLGLVIVDEEQRFGVRQKEALKKLRANVHLLTLTATPIPRTLNMAMSGLRDLSIIATPPANRLAVQTFVHVWDDALLREAFQRELARGGQVYFLHNDVESIGRMHDELQALVPDARIGIAHGQMHERELERVMLDFHKQRTNVLLCSTIIESGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHRAYAYLLVPDGRSITPDAKKRLEAISSMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVKSIKQGRIPDVDDTDRFGADVDLHVPALIPDDYLPDPHARLTLYKRISAARDGNALRELQVEMIDRFGLLPDATKHLFATAELKLDATRLGIRKLDLGGSGGRMQFVEKPAVDPMAVIRLIQGQPKHYRMDGPDKLRITLVLPDAATRFSAARGLLTALQPG*