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SCNpilot_solid_2_scaffold_47_265

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 276096..279614

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=666684 species="Bacteria; Pr similarity UNIPROT
DB: UniProtKB
  • Identity: 97.6
  • Coverage: 999.99
  • Bit_score: 2258
  • Evalue 0.0
mfd; transcription-repair coupling factor (EC:3.6.1.-); K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-] similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 999.99
  • Bit_score: 2158
  • Evalue 0.0
  • rbh
Transcription-repair-coupling factor n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6M2_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 999.99
  • Bit_score: 2258
  • Evalue 0.0
  • rbh

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3519
ATGAAGTCGCAGGTTCGCTCGCCGGCCACGCTGCTTGCGCCCGGCCGTGCCGTCACGCTTGCCAGTACCGCCGAGGGTGCGGAGGGGCTGATCGTTTCTGATCTTGCCCGCGCGGTCGCCGTGCGCAAGGACGCACCCGCCGTCAGCCTCGCGGTGCTGTGCCGCGACGGCGCGCGCATGGCGCAGCTCGCCCGCGCGCTCGAATTCTTCGCGCCGGATGTCACGGTAATGCAGTTTCCGGGGTGGGACTGCCAACCGTATGACCGCGTGTCTCCGCATGGCGGAATTCTGGCGCAGCGCCTGACCACGCTGGCGCGGCTGTCGCGGTTGGCGGGTGGTGGCGACAAACCGCTCGTCGTTCTCACCAGCGTCAATGCCGTTGTGCAACGGGTGCCAGCGCGCGACGCCATGGCGGCGCAGGCGCTCTCTGTTGCACCCGGCCATCGCGTGCCGATGGATTCCATCACCGCATGGCTTGAACACAATGGCTACAGCCGCACCTCGACGGTGCGCGAGCCCGGTGAATATGCCGTGCGTGGCGGCATTCTCGACTTGTTTCCAGCGGGCCTTGACCAGCCGGTGCGGTTCGACTTCTTCGGCGATACGCTGGAATCGATCCGCACCTTCGATGCTGAGACGCAGCGCACGCTGCTCGACATGCGCGCGCTCGATCTCGTGCCGGTGTCCGAGTTTCAGTTGACGACGGAAACCATCCGCCGCTTCCGCATGGGCTATGTCGCGCAGTTCGGTGCGCCGGATCGTGACGATCAGCTTTATGAAGCGGTGAGCGAAGGTCGGCGCCATCCCGGCATGGAACACTGGCAGCCGTTATTCACCGAAAAAATGGACACGCTATTCGACTACCTCGACGGCACGCCGTTTGTGGTCGAGCCGCAGGCCGAGGATGCGGTGCGCGAGCGCTACAAGCAAATCGACGATTATTACGAGGCGCGGCGCGAAGCGATGGAGCATCCCGGCGGCGGCGCGATCTACAAGCCGTTGCCGCCCGACAAACTCTATCTGGCCGAAAGCGAGTGGAGCGAGAAGCTCGCCGTGCAGGCGCTGGCGCGAATGACACCGTTCGCAATGCCGGAAGGCGAGGCCGTGATCGATATTGGCGCGCGGCAGGGACGGGATTTCGCGCCGGAGCGCGCGGATGCCACTGTCAACGTGTTCGAGTCCGTGGTCGCCCACGTCAACCACCTGCATGCCGAACGCAAGAAGGTCGTCGTCGCGCTGTGGAGCGAAGGCTCGCGCGAGCGCATGGCGAGCATGTTGAAGGACCACAAGCTGGTCGTGCTCACCAACGTCAACACCTGGCGCATGGTGCAGGCGACGCCGCGCAACGAGACCATGCTCGCAGTCGTTGGCCTCGATTCTGGTTTCGAGACCGAGAGCATCGCGGTCATCACCGAGCAAGACATCCTTGGCGACCGTCTGGTGCGCGCGCGCAAGTCGAGCCGCAAGGTCGAGAATTTCATTTCGGAAGTCACGTCGCTGGCGACCGGCGATCTCGTCGTCCATGTCGAGCACGGCATCGGCCGCTATATCGGCTTGCAGACGCTGGAAGTCTCCGGCGCGCCGCATGACTGTCTTGAACTGCATTATGCCAACAACGCAAAGCTCTATCTGCCGGTTGAGAACATCGAACTGTTGTCGCGCTATGGCTCCGAGCAGGGCGGCGTCGAACTCGACAGGCTTGGTGGCGGCGGCTGGCAGGCGCGCAAGGCGAAGCTGAAGAACCGCATCCGCGAGATTGCGGGCGACCTCATCAAGATCGCGGCTGAGCGGCAGTTGCACGAGGCACCGAAATTCCCGGTGCATCAGGGGCTGTACGACGAATTCTGTGCGCGCTTCCCGCATGACGAGACGGAAGACCAACTTGGCGCGATCACAGCTTCGCTCGACGACCTCAATGCCGGCAAGCCGATGGATCGTCTGATCTGCGGCGATGTCGGCTTCGGCAAGACCGAAGTGGCGTTGCGCGCGGCGTTCGCCGTGGCGCTGGAAGGACGGCAGGTCGCGGTGGTGGTGCCGACCACGCTGCTCGCGCGCCAGCATGCGAAAAATTTCACCGAACGGTTTCGCGGCTTCCCGGTCAAGGTCGCGCAGGCCTCGCGTCTCGTCAGCGCCAAGGAGCTGCGCGAGACCAAGAAAGGCATGGCGGATGGTAACGTCGATATTGTCGTCGGCACCCATGCGCTACTCGGCAAGGGCATCAAGTTCAAGAACCTCGGCCTCATCATCGTGGACGAGGAGCAGCATTTCGGCGTCTCGCACAAGGAGCGGCTGAAGCAATTGCGCGCCGAGGTGCACGTACTGACGCTGTCGGCCACGCCGATCCCGCGCACGTTGCAGTTGGCGCTGACCGGGGTGCGAGATCTATCGATCATCGCCTCGCCTCCAGTTGATCGTCTTGCGGTGCGCACCTTCGTGGCGCCCTTCGATCCGCTGATGATCCGCGAAGCGTTGCTGCGTGAGCGTTACCGCGGCGGACAGGCGTTTTATGTTTGCCCGCGTATCGACGATCTTGCGGAAGCCAAGGACTTCCTCGACAAGAACGTGCCGGAGATGAGGGTCGCGGTCGCGCACGGCCAGATGCCACCGAGCGTAATCGAGGACATCATGTCGGCGTTCTATGACGGCAAGTACGATATCCTGCTCTCGACCACCATCGTCGAATCCGGCCTTGATATTCCGAACGCGAATACGCTCATCGTCCACCGCGCGGACATGTTCGGCCTCGCGCAGCTTTATCAGTTGCGTGGCCGGGTCGGGCGTTCAAAGCTACGCGCTTACGCGCTGTTCACGCTGCCCACGCAGCGGCAGATCACGCCACAAGCGGAGCGGCGACTGAAGGTGTTGCAGTCGCTGGAAAACCTCGGCGCAGGATTTCAGCTCGCCTCGCACGACCTCGATATTCGTGGCGCGGGAAATCTGCTCGGCGAGGAACAGTCAGGCCACATCAAGGAAGTCGGCTTCGAACTCTACCAGCAGATGCTGGAGGAGGAGATTCTCAACCTCAAGGCTGGCATTTCCGCGCCTGTCGAGGATCGCTGGTCGCCGCAGATTACACTCGGTATGCCGGTGCTCATTCCTGAGGATTATGTCGCTGACCTCGCAGTGCGGCTGTCACTCTACCGACGTTTGGCCGATCTTGAGACCGACGACGAGATCGCCGACTTCGGTGCGGAGATGCGTGACCGCTTCGGTCCGCTGCCGGACGAGGTGCGTTTCCTATTCAAGCTAGCCTCGATCAAGAACTATTGCCGCCGCGCCAATATCGAGAAGCTCGATGCGGGCCCGAAAGGCGCATCGATCAGCTTCCGCAACAACAGCTTCGCGGAGCCGGAGCGCCTGGTTTATTTTATTCGGCAATACGGGCAGGCCGCAAAGGTGCGGCCTGATATGAAGGTGGTGTTCTTGCAGGAGTGGGCGACACCCGAGGATCGCATGGAAGGTGTCACAGACATTCTTCGTCAGTTGGCCAATCTCGCGGAAGGCCGCAAGGCGGCTTGA
PROTEIN sequence
Length: 1173
MKSQVRSPATLLAPGRAVTLASTAEGAEGLIVSDLARAVAVRKDAPAVSLAVLCRDGARMAQLARALEFFAPDVTVMQFPGWDCQPYDRVSPHGGILAQRLTTLARLSRLAGGGDKPLVVLTSVNAVVQRVPARDAMAAQALSVAPGHRVPMDSITAWLEHNGYSRTSTVREPGEYAVRGGILDLFPAGLDQPVRFDFFGDTLESIRTFDAETQRTLLDMRALDLVPVSEFQLTTETIRRFRMGYVAQFGAPDRDDQLYEAVSEGRRHPGMEHWQPLFTEKMDTLFDYLDGTPFVVEPQAEDAVRERYKQIDDYYEARREAMEHPGGGAIYKPLPPDKLYLAESEWSEKLAVQALARMTPFAMPEGEAVIDIGARQGRDFAPERADATVNVFESVVAHVNHLHAERKKVVVALWSEGSRERMASMLKDHKLVVLTNVNTWRMVQATPRNETMLAVVGLDSGFETESIAVITEQDILGDRLVRARKSSRKVENFISEVTSLATGDLVVHVEHGIGRYIGLQTLEVSGAPHDCLELHYANNAKLYLPVENIELLSRYGSEQGGVELDRLGGGGWQARKAKLKNRIREIAGDLIKIAAERQLHEAPKFPVHQGLYDEFCARFPHDETEDQLGAITASLDDLNAGKPMDRLICGDVGFGKTEVALRAAFAVALEGRQVAVVVPTTLLARQHAKNFTERFRGFPVKVAQASRLVSAKELRETKKGMADGNVDIVVGTHALLGKGIKFKNLGLIIVDEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIASPPVDRLAVRTFVAPFDPLMIREALLRERYRGGQAFYVCPRIDDLAEAKDFLDKNVPEMRVAVAHGQMPPSVIEDIMSAFYDGKYDILLSTTIVESGLDIPNANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPTQRQITPQAERRLKVLQSLENLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEEILNLKAGISAPVEDRWSPQITLGMPVLIPEDYVADLAVRLSLYRRLADLETDDEIADFGAEMRDRFGPLPDEVRFLFKLASIKNYCRRANIEKLDAGPKGASISFRNNSFAEPERLVYFIRQYGQAAKVRPDMKVVFLQEWATPEDRMEGVTDILRQLANLAEGRKAA*