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SCNpilot_solid_2_scaffold_502_20

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 19366..23502

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su similarity UNIPROT
DB: UniProtKB
  • Identity: 99.6
  • Coverage: 999.99
  • Bit_score: 2703
  • Evalue 0.0
rpoB; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 999.99
  • Bit_score: 2683
  • Evalue 0.0
  • rbh
DNA-directed RNA polymerase subunit beta n=2 Tax=Afipia RepID=D6VAF5_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 99.6
  • Coverage: 999.99
  • Bit_score: 2703
  • Evalue 0.0
  • rbh

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Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4137
ATGGCGCAGTCGCAGCAAACTTTCACCGGTCGCAAGCGTGTTCGCAAGTTTTTCGGACACATCAAGGAAGTCGCGGAGATGCCGAACCTGATCGAGGTTCAGAAGGCATCCTACGACCAGTTCCTGATGGTCGACGAGCCTCAAGGTGGACGGCTGGACGAAGGTCTGCAGGCTGTATTCCGGTCGGTGTTCCCGATCAACGACTTCTCCGGCACCTCGCAGCTCGAATTCGTACGCTACGAGTTCGAGGCTCCGAAGTATGACGTCGACGAGTGCCGCCAGCGCGGCATGACCTTTGCCGCGCCGCTTAAGGTGACGCTACGCCTGATCGTGTTCGATATCGACGAAGAAACTGGTGCGAAGTCGGTGAAGGACATCAAGGAGCAGGACGTCTACATGGGCGACATTCCGCTCATGACGATGAACGGCACCTTTATTGTTAATGGCACCGAGCGCGTCATCGTCTCGCAGATGCACCGTTCGCCGGGTGTGTTCTTCGATCACGACAAGGGTAAGACCCATTCCTCGGGCAAGCTGTTGTTCGCCGCGCGCGTCATTCCGTATCGCGGCTCGTGGCTCGACATCGAGTTTGACGCCAAGGACATCGTGTTCGCGCGCATCGACCGCCGCCGCAAGATTCCGGTGACCTCGCTGATGCTGGCGCTCGGTCTCGATGGCGAGGAGATTCTATCGACCTTCTACAAGAAGATTCAGTACAAGCGCGCCAAGGACGGCTGGCGCGTGCCGTTCTCGGCTGATCGCTTCCGTGGCTATTCAGCTGCGACCGATCTCGTCGATGCGGATTCGGGCAAGGTTGTGCTCGAGGCCGGCAAGAAGCTCACGGTGCGCCAGGCGCGCCTCCTGCAGGAGAAGGGTCTCAAGGCGTTGCGCATGAGCGACGCCGATCTCGTCGGCATGTTCCTCGCCGAGGATCTCGTCAACCCGAAGACCGGCGAGATCTACGCCGAAGCGGGCGAGGAGATCACCGAGAAATCGCTGAAGGCGCTGATCGAACAGGGCTACAAGGACCTGCCGATCCTCGACATCGACCATGTCAACGTCGGCCCCTACATCCGCAACACGCTCTCCGCCGACAAGAACATGACGCGTGAGGACGCGCTGTTCGACATCTACCGCGTGATGCGTCCGGGTGAGCCGCCGACGCTCGAGTCCGCGCAGAACATGTTCCAGTCACTGTTCTTCGATTCCGAGCGCTACGACCTCTCGGCTGTGGGCCGCGTCAAGATGAACATGCGCCTCGAGCTCGATGCGCCGGACACCCACCGCACGCTGCGCAAGGAAGACATCCTCGCCGTCATCAAGACGCTGGTGGACCTGCGCGACGGCAAGGGTGAGATCGACGATATCGACCACCTCGGCAACCGCCGCGTGCGCTCGGTCGGCGAGCTGATGGAAAATCAGTATCGTGTCGGCCTCTTGCGCATGGAGCGCGCCATCAAGGAGCGCATGTCGAGCGTCGACATCGACACCGTGATGCCGCAGGATCTCATCAATGCGAAGCCTGCCGCTGCCGCGGTGCGTGAGTTCTTTGGTTCCTCGCAGCTCTCGCAGTTCATGGACCAGACCAACCCGCTGTCGGAAATTACCCACAAGCGCCGCCTCTCGGCGCTTGGACCGGGCGGTCTGACCCGCGAACGTGCCGGCTTCGAGGTGCGCGACGTGCATCCGACGCATTACGGCCGAATCTGCCCGATCGAGACGCCGGAAGGTCCGAACATTGGCCTGATCAACTCGCTCGCGACGTTTGCTCGCGTGAACAAGTACGGTTTCGTCGAGACGCCTTACCGCAAGGTCAAGGACGGTCGCGTCACCGACGAGGTCGTGTATCTCTCGGCGATGGAAGAGGGCCGCTACCGTGTTGCGCAGGCGAACGTGCCGCTCGACAACCGCGGCCGCTTCACCGAAGACCTCGTGATCTGCCGTCACGCCGGCGAAGTGATCCAGCTCACGCCGGATCGCGTCGATTACATGGACGTGTCGCCGAAGCAGCTCGTTTCCGTCGCCGCGGCGCTGATCCCGTTCCTCGAGAACGACGACGCCAACCGCGCGCTGATGGGCTCGAACATGCAGCGTCAGGCCGTGCCGCTGGTGCGTGCTGAAGCGCCGTTCGTCGGCACCGGCATGGAAGGTGTGGTTGCACGCGACTCGGGTGCTGCGATCGCGGCGCGCCGTACCGGCGTGATCGACCAGATCGATGCGACACGTATCGTTATCCGTGCGACTGAAGATCTTGATCCGACCAAGTCGGGTGTCGACATCTATCGCCTGATGAAGTTCCAGCGCTCCAACCAGTCGACCTGCATCAACCAGCGGCCGCTGGTGAAGGTGGGTGATGTGGTGAAAAAGGGCGACATTATCGCGGACGGTCCGTCGACCGACCTCGGCGAACTCGCACTCGGCCGCAATGTGCTCGTCGCGTTCATGCCGTGGAATGGCTATAACTTCGAAGACTCGATCCTTTTGTCCGAGCGGATCGTCAAGGATGACGTCTTCACCTCGATCCACATCGAGGAATTCGAGGTCATGGCCCGCGACACCAAGCTCGGCCCCGAGGAAATCACCCGCGACATTCCGAACGTCTCGGAGGAAGCGCTGAAGAACCTCGACGAAGCCGGTATCGTCTACATCGGTGCGGAAGTCCGCGCCGGCGACATCCTCGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAAAAGCTCCTGCGCGCCATCTTCGGTGAAAAGGCGTCCGACGTGCGCGATACCTCGCTCCGCGTGCCTCCGGGCGTGCAGGGCACGATCGTGGAAGTCCGCGTGTTCAACCGTCACGGCGTCGACAAGGACGAGCGTGCGCTGGCGATCGAGCGGGAAGAGATCGAACGTCTCGCCAAGGACCGCGACGACGAACAGGCGATCCTCGACCGCAACGTCTACGGCCGTCTTGCTGACCTTCTCGAAAACCGTCAGGGCATTGCTGGCCCGAAGGGCTTCAAGAAGGACACCAAGATCACCCGGGCGGTGCTGGAAGAGTATCCGCGCTCGCAATGGTGGGCGTTCGCTTCGCCAAACGACAAGCTGATGGCCGAGATCGAGGCCATGCGGAAGCAGTACGACGAATCGAAGAAGGGCCTCGAACAGCGCTTCCTCGACAAGGTCGAGAAGCTGCAGCGCGGCGATGAACTGCCACCGGGCGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATCCAGCCCGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTCGTCTCCAAGATCGTGCCGATCGAGGACATGCCGTTCCTGGAAGACGGCACTCATGCCGACATCGTGCTCAACCCGCTGGGCGTGCCTTCACGCATGAACGTCGGCCAGATTCTGGAGACGCATCTCGGCTGGGCCTGCGCGGGCCTCGGCAAGCGGATCGGGCAGGCGGTCGATGCCTATCTCGCCAAGGGTGACGGCAAGTCCGACACCAAGGCGCTGAAGAGCACGCTGAAGGAGGTCTATGGCGACGACGAAGTCGTGAAGTCGCTGAACGACAACGAGCTGCTTGAACTGGGCCGCAACCTCAAGCCGGGCGTGCCGATCGCGACGCCGGTGTTCGACGGTGCCAAGGAAGGCGATATCGAGCAGATGCTCGAACTCGCCGGTGTCGACAAGTCGGGCCAGTCGGTCGTCTATGACGGACGCACCGGCGACCAGTTCGATCGCAAGGTGACGGTGGGCTACATCTACATGCTCAAGCTGCACCACCTCGTGGACGACAAGATCCACGCGCGTTCGATCGGTCCGTACTCGCTCGTCACCCAGCAGCCGCTGGGTGGCAAGGCGCAGTTCGGCGGCCAGCGCTTCGGCGAAATGGAAGTCTGGGCACTCGAGGCTTACGGCGCGGCCTACACGCTGCAGGAAATGCTGACCGTGAAGTCGGACGACGTCGCGGGCCGCACCAAGGTGTACGAGGCCATCGTGCGTGGCGACGACACCTTCGAGGCGGGCATTCCCGAAAGCTTCAACGTGCTGGTCAAGGAAATGCGCTCGCTCGGCCTCAACGTCGACCTGCACAATTCCAAGATGGGCCCCGCGCCGACCTCAGAGGCGGCCGAGTAA
PROTEIN sequence
Length: 1379
MAQSQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVFRSVFPINDFSGTSQLEFVRYEFEAPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKSVKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDIVFARIDRRRKIPVTSLMLALGLDGEEILSTFYKKIQYKRAKDGWRVPFSADRFRGYSAATDLVDADSGKVVLEAGKKLTVRQARLLQEKGLKALRMSDADLVGMFLAEDLVNPKTGEIYAEAGEEITEKSLKALIEQGYKDLPILDIDHVNVGPYIRNTLSADKNMTREDALFDIYRVMRPGEPPTLESAQNMFQSLFFDSERYDLSAVGRVKMNMRLELDAPDTHRTLRKEDILAVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPYRKVKDGRVTDEVVYLSAMEEGRYRVAQANVPLDNRGRFTEDLVICRHAGEVIQLTPDRVDYMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARDSGAAIAARRTGVIDQIDATRIVIRATEDLDPTKSGVDIYRLMKFQRSNQSTCINQRPLVKVGDVVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKGFKKDTKITRAVLEEYPRSQWWAFASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAGLGKRIGQAVDAYLAKGDGKSDTKALKSTLKEVYGDDEVVKSLNDNELLELGRNLKPGVPIATPVFDGAKEGDIEQMLELAGVDKSGQSVVYDGRTGDQFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSEAAE*