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SCNpilot_solid_2_scaffold_2619_10

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 8611..9168

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Afipia felis ATCC 53690 RepID=K8NR01_AFIFE similarity UNIREF
DB: UNIREF100
  • Identity: 87.0
  • Coverage: 185.0
  • Bit_score: 317
  • Evalue 6.70e-84
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EKS29910.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia similarity UNIPROT
DB: UniProtKB
  • Identity: 87.6
  • Coverage: 185.0
  • Bit_score: 319
  • Evalue 4.20e-84
RNA polymerase sigma factor RpoE; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 58.6
  • Coverage: 181.0
  • Bit_score: 210
  • Evalue 6.20e-52

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Taxonomy

Afipia felis → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 558
GTGCTGCCGTCTCCCGAGGAACTGATCGGTCTGATTGACGCGGTTGCGCGGACGCAGGACCGGAATGCCTTCGCGCGACTTTTCGGGTATTTCGCGCCTCGCGTCAAAAGCTTCCTCATGCGATCGGGCCTTGAAGACGCCGCTGCGGAGGAAATGGCCCAGGAGGTCATGATAGCGGTATGGCGTAAAGCGTCCTATTTCGATCCCGGTAAAGCCGGCGCGTCGACTTGGGTGTTTACGATTGCCCGCAATCAAAGGATCGACCGTCTGCGTCGCACGCGATCTCGGACTGCCGATCATCTTCTGGATCCGACTGATGAACTCGATATGCCCCCTTCGGGTGAAGATATCGCCATCGTTGCCGAACGGGAGGAAGGGGTGCGCAAGGCGTTGGAAAGCCTGCCGATCGATCAGTCAACCATTGTGCGGCTGTCGTTCTTTGCCGAGAAACCGCATGCGGAGATTGCAAGAGAGCTGGGCATTCCTCTCGGCACCGTAAAATCCCGTGTTCGGCTCGCATTGAATCGGCTTCGGACCCTTTTGGACAGCGATATATGA
PROTEIN sequence
Length: 186
VLPSPEELIGLIDAVARTQDRNAFARLFGYFAPRVKSFLMRSGLEDAAAEEMAQEVMIAVWRKASYFDPGKAGASTWVFTIARNQRIDRLRRTRSRTADHLLDPTDELDMPPSGEDIAIVAEREEGVRKALESLPIDQSTIVRLSFFAEKPHAEIARELGIPLGTVKSRVRLALNRLRTLLDSDI*