ggKbase home page
Advanced Search
Search Help

SCNpilot_cont_300_bf_scaffold_39_77

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: 69606..73928

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase similarity UNIPROT
DB: UniProtKB
  • Identity: 80.6
  • Coverage: 999.99
  • Bit_score: 2345
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PUG7_CHIPD similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 999.99
  • Bit_score: 2345
  • Evalue 0.0
  • rbh
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 80.6
  • Coverage: 999.99
  • Bit_score: 2345
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 4323
ATGGCAATAAAAAAAGATAATCGCCCCAAATCTGGTTTCGATAAAATCACGATCAGCCTTGCTTCCCCGGATAATATCCTGGATCGTTCCTACGGTGAGGTATTAAAGCCTGAAACGATTAACTATCGTACCTACAAACCTGAAAGAGATGGTTTGTTTTGTGAAAAAATATTCGGTCCTGTAAAAGATTATGAATGTTATTGTGGTAAGTACAAGCGTATCCGTTATAAGGGTATCGTTTGTGACCGTTGTGGTGTAGAGGTTACAGAAAAGAAAGTACGTCGTGAGCGTATGGGTCACTTAAAATTAGTGGTGCCTATCGTACACATCTGGTATTTCAAATCTTTACCTAATAAAATTGGTTATCTGTTAGGTACAAGCTCTAAAAAATTAGAGGCTATTGTATACTATGAAAGATATGTTGTTTGTCAGGCCGGTGAAGCTGAAGAGCTGATCCGTCAGAAATTAAACCTGAAAGACAGCGAAAATACTTATATGCAATTATTGTCTGAAGATGAGTACCTGGAGATCCAGGATGCTTTATCTAAAGAGAATCAATATTTGCCGGATGAAGATGAGAACAAATTCGTAGCGAAAATGGGTGCTGAAGCAGTTCAGGATCTGTTAGGTCGCCTGGACCTGGATGGTTTGTCTTTCTCTTTACGTGCAGCAGCTGCTAACGAAACTTCTCAACAACGTAAACAAGAGGCCTTAAAACGCCTGAGCGTGGTAGAAGCTTTCCGTGATGCCAACACCCGTATCGAGAACAAGCCTCAGTGGATGGTCATGCAATACTTACCGATCATCCCGCCGGAATTACGTCCTTTAGTTCCATTGGATGGTGGCCGTTTCGCTTCTTCCGATCTGAATGACCTGTACCGTCGCGTTATTATCCGTAACAACCGTCTGAAAAGATTATTAGAGATCAAAGCGCCTGAAGTAATCTTACGTAATGAAAAACGTATGTTACAGGAAGCGGTTGACTCCTTATTTGATAACTCCCGTAAATCTAATGCCGTTAAAGCGGAAGGTGGCCGTGCCCTGAAATCTCTTTCTGATGTATTGAAAGGTAAACAAGGTCGTTTCCGTCAGAATTTGTTAGGTAAACGTGTGGATTACTCCGGTCGTTCTGTAATCGTTGTGGGACCTGAAATGCAATTGCATGAATGTGGTATCCCTAAAGATATGGCGGCTGAATTGTTCAAACCGTTCATCATCCGTAAACTGATCGAAAGAGGTATCGTAAAAACCGTAAAATCGGCTAAGAAATTAGTAGAAAGAAAAGAAGCGGTGGTTTGGGATATCCTGGAGAATGTACTGAAAGGTCACCCGGTAATGTTAAACCGTGCCCCTACGCTCCACAGATTGTCTATCCAGGCCTTCCAGCCAAGGATGATCGAAGGTAAAGCGATCCAGTTACACCCATTAGTATGTTCTGCATTCAATGCGGATTTCGATGGTGACCAGATGGCGGTTCACGTACCTTTAAGTAATGCAGCTATTTTAGAAGCACAAATGTTGATGCTGGCTTCTCACAATATCCTTAACCCGCAAAATGGTACACCAATCACCCTTCCTTCTCAGGACATGGTATTGGGTCTGTATTATTTAACGAAAGGTAAGAGAACTAACGATACGGAGACCATTAAAGGTGAAGGTAAAGCATTCTACTCTGCAGAAGAGGTGATCATTGCCCATAACGAAGGCAAGATCGATATGCACGCCTGGATCAAAGTTAAAACCAATGTGCGTACAAAATCCGGTGAACTGGAATACAAACTGATCGAAACTACAGTAGGTCGTGTATTGTTCAACCAGGTAGTGCCTACTCAAAACGGTTTCGTTGATGCCTTATTGACTAAGAAATCTTTGCGTGAGATCATTGGTACCATTTTGAAAAATACCAATATCCCTACTACCGTTAGGTTCCTGGATGATATCAAACGCTTAGGATACCGTACGGCATTCAAAGGCGGTCTGTCCTTCAACATTAATGACCTTACCATTCCGGATATCAAAGAAAAATTAGTTGCAGGTGCACAATTAGAAGTTGATGAGGTTTGGGAAAACTATAATATGGGTCTGATCACGAACAATGAACGTTACAACCAGATCATCGATATCTGGTCTCGTGTAGATACACGTGTAACCGAAACGTTGATCAGTGAGATGGCTGCTGATAAGCAAGGGTTCAACTCTGTATACATGATGTTGGATTCCGGAGCCCGTGGTTCTAAACAACAGGTAAAACAGCTGGCCGGTTTAAGAGGATTGATGGCGAAACCACGTCGTTCAGGCTCTTCAGGTTCAGAGATCATTGAAAACCCGATCTTGTCCAACTTTAAATCTGGCCTGTCTGTATTAGAGTACTTCATCTCTACGCACGGTGCGCGTAAAGGTCTTGCGGATACCGCCCTTAAAACAGCGGATGCGGGTTACCTGACCCGTCGTCTGGTAGACGTGGCACAGGATGTGGTGATCAACACTGCTGACTGTGGTACTTTACGTGGTCTGGCTACTTCTGCATTAAAAGATAATGAAGAGATCGTAGAACCATTGTTCGACCGTATCTTAGGCCGTACTTCTTTGCATAATGTTTATCACCCTATAACTGATGAACTGATCGCGAAAGCAGGTATTGAGATCGACGAAGATATCGCACACGAAATCGAAGAATCCGGTATTGAAACTGTTGAGATCCGTTCTGTATTGACTTGTGAAGCTAAGCGTGGTGTATGTGCCAAATGTTATGGTAAAAACCTGGCAACCGGCTATATGACACAAAAAGGTGATGCTGTAGGTATCATCGCTGCACAGTCCATCGGTGAGCCGGGTACACAGTTGACACTCCGTACCTTCCACGTGGGTGGTACCGCGAACTCCTCAGCGATCGAGTCCAACTTGTTAGCTAAGTTTGAAGGTACCGTTCAGTTTGATGGTCTGCGTACCGTTAAAGCCATCAATGATGAAGGTGAAGACGTACAGATCGTTATCGGACGTACCGGTGAGTTGAGAGTAGTAGATGTAGAGCAAGACAGGTTGTTGAATACACACAATATCCCTTACGGTTCTACCTTGAAAGTGAAAAACGGTCAGAGCATCAAGAAAGGCGATGTGATCTGTTCATGGGATCCGTTCAATGCCGTTATCATTTCTGAGATCGATGGGGTTGTTGACTTCGAAAATGTAATCGAAGGCGTGACTTATCGTGAAGAAGCTGATGAGCAAACAGGTCACAGAGAGAAAGTCGTTATCGAGACTAAAGATAAAACCAAAATTCCTTCTATCCTGATCAATGGTAAAGAAGTGAAAGAATATAACTTACCGGTAGGTTCACACATTGGAGTAAAATCCGGTGATAAAGTGAAGTCCGGACAGGTAATCGTTAAGATTCCACGTGTTATGGGACGTTCTAAGGATATCACAGGGGGTCTTCCTCGTGTAACAGAACTGTTCGAAGCACGTAACCCTTCTAATCCTTCTGTAGTAGCTGAGATTGATGGTGTAGTAAGCTTTGGTAACATCAAGCGTGGTAACCGTGAGATCGTGGTAGAAAGTCGCGAAGGATTGGTGAAAAAATACCTGGTGCCATTGACCCGTCAGATCACGGTACAAGATGGTGACTTTATCAAAGCGGGTAATCCATTATCTGATGGAGCTACCACGCCGAGTGATATCCTGGCCATTAAAGGACCAAATGCCGTACAAGAATACCTGGTGAATGAAATTCAGGAGGTTTACCGTCTACAAGGGGTAAAAATCAATGATAAACACATCGAGGTAATTGTACGCCAGATGATGCGTAAAGTAGCCGTTCAGGATCCTGGTGATACTAAGTTCCTGGAAGATGATACCGTTGATAAAAACGATATCCTGGAAGAAAACGATTGGATCTTTGATAAGAAAGTAATCACCGAAGCCGGAAATTCTGAGAAATTTGCGCCGGGCCAGATCACTACCTTACGTGAGATCAGGGAAGAAAACAGCTTATTGCGCCGTGCAGATAAGAAATTGGTAGAATACCGTGATGCGGTACCTGCAACTTCTTCTCCATTGCTGCAAGGTATTACCAAAGCCTCTTTGGGTGTACCAAGTTGGATCTCTGCTGCATCGTTCCAGGAAACTACGAAAGTATTGTCTACTGCGGCGATCACCGGTAAATCAGATAACCTGATGGGATTGAAAGAAAACGTAATTACAGGTGGCTTCATTCCTGCAGGTACCGGTATGCGTGACTTCAATGACATGGTAGTAGGATCTAAAGAAGAATACGAATTATTATTGAACAACAGAGATGTACTTGAGTTTGACGACGAAGAGTAA
PROTEIN sequence
Length: 1441
MAIKKDNRPKSGFDKITISLASPDNILDRSYGEVLKPETINYRTYKPERDGLFCEKIFGPVKDYECYCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHLKLVVPIVHIWYFKSLPNKIGYLLGTSSKKLEAIVYYERYVVCQAGEAEELIRQKLNLKDSENTYMQLLSEDEYLEIQDALSKENQYLPDEDENKFVAKMGAEAVQDLLGRLDLDGLSFSLRAAAANETSQQRKQEALKRLSVVEAFRDANTRIENKPQWMVMQYLPIIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLLEIKAPEVILRNEKRMLQEAVDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEMQLHECGIPKDMAAELFKPFIIRKLIERGIVKTVKSAKKLVERKEAVVWDILENVLKGHPVMLNRAPTLHRLSIQAFQPRMIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSNAAILEAQMLMLASHNILNPQNGTPITLPSQDMVLGLYYLTKGKRTNDTETIKGEGKAFYSAEEVIIAHNEGKIDMHAWIKVKTNVRTKSGELEYKLIETTVGRVLFNQVVPTQNGFVDALLTKKSLREIIGTILKNTNIPTTVRFLDDIKRLGYRTAFKGGLSFNINDLTIPDIKEKLVAGAQLEVDEVWENYNMGLITNNERYNQIIDIWSRVDTRVTETLISEMAADKQGFNSVYMMLDSGARGSKQQVKQLAGLRGLMAKPRRSGSSGSEIIENPILSNFKSGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVAQDVVINTADCGTLRGLATSALKDNEEIVEPLFDRILGRTSLHNVYHPITDELIAKAGIEIDEDIAHEIEESGIETVEIRSVLTCEAKRGVCAKCYGKNLATGYMTQKGDAVGIIAAQSIGEPGTQLTLRTFHVGGTANSSAIESNLLAKFEGTVQFDGLRTVKAINDEGEDVQIVIGRTGELRVVDVEQDRLLNTHNIPYGSTLKVKNGQSIKKGDVICSWDPFNAVIISEIDGVVDFENVIEGVTYREEADEQTGHREKVVIETKDKTKIPSILINGKEVKEYNLPVGSHIGVKSGDKVKSGQVIVKIPRVMGRSKDITGGLPRVTELFEARNPSNPSVVAEIDGVVSFGNIKRGNREIVVESREGLVKKYLVPLTRQITVQDGDFIKAGNPLSDGATTPSDILAIKGPNAVQEYLVNEIQEVYRLQGVKINDKHIEVIVRQMMRKVAVQDPGDTKFLEDDTVDKNDILEENDWIFDKKVITEAGNSEKFAPGQITTLREIREENSLLRRADKKLVEYRDAVPATSSPLLQGITKASLGVPSWISAASFQETTKVLSTAAITGKSDNLMGLKENVITGGFIPAGTGMRDFNDMVVGSKEEYELLLNNRDVLEFDDEE*