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SCNpilot_cont_300_bf_scaffold_284_91

Organism: SCNPILOT_CONT_300_BF_Bacteroidetes_43_15

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 ASCG 13 / 38
Location: comp(116233..119601)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=485918 species="Bacteria; Ba similarity UNIPROT
DB: UniProtKB
  • Identity: 63.9
  • Coverage: 999.99
  • Bit_score: 1443
  • Evalue 0.0
transcription-repair coupling factor n=1 Tax=Segetibacter koreensis RepID=UPI00037008A6 similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 999.99
  • Bit_score: 1455
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 63.9
  • Coverage: 999.99
  • Bit_score: 1443
  • Evalue 0.0

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Taxonomy

Chitinophaga pinensis → Chitinophaga → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 3369
ATGAACCTGCAAACACTGCAAGGCTTATATTCGTCTGATGTCCGTTTAAAAGAACTGGCAGCCGCATTTTCATTGCCCGATCCCAAGCAAAGTATACTTCTTCAAAACCTGAAAGCAAATGCGGTCGGTTTTGTGGCCCATAGTATCTGGGAGCAATCAGAGCTGAACCATATCTTCATCCTGGATGATAAAGACGAAGCTGCCTATTTTCACAACGATTTTGAGCACCTGAGCGGTGCCCTGGATATTTTCTTTTTCCCCGATTCTTACAAGAAAACGGGCGTGTACACCGATGTCAACAGTAGCCACGTCATGCTCCGTACCGAAGCGCTCAATAAATGGAGCGGCGAGCAGGTGCGCAAGAAAGTGATGGTTACTTATCCTGAAGCGCTTTTTGAAAAAGTGGTACAGGCAAAGACCCTGAGCAAGAACATGATCCAGATCGCGGTCAATAACCACCTGGATGTAAAGGGTATACTCACCCGCCTGGTCGCCCTGGGATTCCGGCACGAGGATTTTGTATATGAGCCCGGGCAGTTTGCCATGCGCGGAGGTATCCTGGACATTTACTCTTTCGGGAATGAGCATCCTTATCGCATCGAGTTATTCGGTAATGAGGTGGACAGCATCCGTATTTTTAACCCGGAGACACAATTGTCGGAACGAAAATTGTTGCAGGTATCTATATTGCCCAATATCGAAACCCGTTTTGAAGCTAAAGAAAAAGTTTCCTTGTTGGACTTTGTGCCGGCAAATACGGTTTTTTGGTTTAAAGATAAAGACATCTTCCTGGGCAAACTGGCCCATTATGAGGATAAATTACTGGAGTTGCTGGCAATCAATGAAGGAGTACTGGAGCAGCGTGGAGAAGATGATGATGAGCCGAAGTTATTAACTGCAGAAGACTTTGAATCGGCGACTTCCTGGAAGGGCAGAATCAATGATTTTCACCAGGTGCAGTTCTCTAATACAGAAGGAAAAGAAACGGCCGCCGATGCGACGATTTCTTTCCGTACCGAGCCACAGCCCAGTTTTAACCGCAATTTTGACCTGCTCTCGGCCAATTTAAGAAAATGGTCGGAGCAACACTATACAGCTTATATTTTTGCGGAGAATGCAAAACAACTGGAACGCCTGCGCGTGATCTTTGAAGACACGAATGCGAGTGTGAGCTTTGTTCCTGTGCCGGTCTCTATCAGTAATGGCTTTATCGATCATGATAAAAAAGTGCTGGTCTATACAGATCACCAGATCTTCCAGCGTTTTTATAAATATAAGATCAAGCAGGCTTACAGTAAAGGGAAGGCGATCACTATAAAATCTCTTCGTGAACTGCAGCCCGGCGATTTCGTCAGCCATATCGATTATGGAGTGGGCGTGTACAGCGGCCTGCAGACGATTGATGTGAATGGTGCCAGGCAGGAAGCGGTGCGCATTATTTACAAGGATAATGATGTGCTGTATGTGGGCATCAACTCCCTGCATAAGATCTCTAAATATGCCGGTAAAGAAGGCACTCAGCCCAAGGTACATAAGTTGGGCAGTGATGTCTGGAACCGGCTTAAAGATAAGACCAAGCGGCAGGTTAAGGATATAGCTGCCGACCTGATCAAGTTATATGCCAAGCGTAAAGCGGCTGAGGGCTTTATGTTTACACCGGACTCTTATTTGCAGACGGAACTGGAAGCTTCTTTCTTTTATGAAGATACCCCGGACCAGTCTAAGGCGGTGGCTGATGTGAAGCGGGATATGGAATCGCCTAATCCTATGGATCGCCTGGTCTGTGGTGATGTGGGCTTCGGTAAGACGGAAGTGGCCGTGCGTGCGGCCTTCAAGGCGGTTACGGATAGCAAACAGGTGGCGGTCATGGTGCCGACTACTATCCTGGCTTACCAGCATTTCCAGACCTTTAGCGAACGCCTGAAAGACTTCCCGGTGAATGTGGATTTCCTGAACCGTTTTAAATCTTCCAAGGATAAAAAAGAGACTTTGCAGAAGCTGGAGGAAGGAAAGATCGATATCCTCATAGGTACTCATGCCCTGATGGGTAAGGATGTGAAGTTTAAAGACCTGGGCCTTTATATCGTAGATGAGGAGCAGAAATTCGGCGTAGCCGCTAAAGAAAAATTAAGAGAGCGTAAGCTGAACGTGGATACGCTCACGCTTACCGCAACGCCGATACCACGTACCCTGCAGTTTTCTTTAATGGCTGCAAGGGACCTGAGTATTATTAATACACCGCCGCCTAACCGCCAGCCGGTGCATACAGAGCTGATCGGTTTTGATGAAGACTTTATCCGCGATGCGATCTATTATGAAGCAGAGCGTGGCGGCCAGGTCTATTTTATACATAACCGCGTGCAGAGCCTGCCCTCTATGGCAGAGAAGATCAAGGCGCTGTGCCCTGACCTGGAAATTGCCGTGGCGCACGGGCAGATGGAAGGTGCCAAACTGGAGAAGACGCTGATGGACTTTATTGCGCATAAGTATGATGTGATCTGCTGTACCAATATTGTAGAATCAGGTGTGGACATCAGTAATGCCAATACGATTATCATCAATAATGCGCACCAGTTCGGATTGAGCGATCTGCACCAGTTACGTGGCCGGGTAGGGCGTAGTAATAAAAAGGCCTTCTGCTACCTGGTAGCTCCTTCTTTGCTCACCTTACCGAATGACAGCCGCAGGCGTTTGCAGATACTGGAAGAGTTCAATGAGCTGGGGAGTGGATTCCAGATCGCTATGCGTGACCTGGATATCCGTGGAGCCGGTAACCTTTTGGGTGGCGAGCAGAGCGGCTTTATTGCAGATATCGGTTTCGAGATGTACCAGAAGATATTGGCAGAGGCGATCCGTGAATTGAAGCAAGGTGACTTCAAGGAAGTGTTTGCCGAAGAACTGGAACGCAAAAAAGATTATGTCTCCGACTGTACGATTGATACGGACCTGGAGATCCTGATCCCGGAAACTTATGTAGGGAGTATTACGGAACGTTTGTCGCTCTATACTCAACTGGATAACCTGGAGACGGAAGAAGAGTTGCAGGCATTTGAAGCGATGCTGATCGACCGTTTCGGACCGATACCGCGCGAGGTGAAAGACCTGTTCACCGTAGTTCGTTGCCGTAAGATAGCTAAGGACCTTGGTTTTGAGAAGCTGATCATCAAGAATAAGGTGATGCGCCTGTATTTTATCAATAACCCGGACTCTCCTTATTATGAAAGTGAGACTTTCCATAAGATCATGGGCTATATACAAACGGGTACCAACCAGGCTAAGATGAAGCAGATGGGTACTGTATTTTTACTGGTTGTGAACCATATTCATTCTATGGATGATGTGAAATTCTTCCTGGAGGGTGCTTTATAA
PROTEIN sequence
Length: 1123
MNLQTLQGLYSSDVRLKELAAAFSLPDPKQSILLQNLKANAVGFVAHSIWEQSELNHIFILDDKDEAAYFHNDFEHLSGALDIFFFPDSYKKTGVYTDVNSSHVMLRTEALNKWSGEQVRKKVMVTYPEALFEKVVQAKTLSKNMIQIAVNNHLDVKGILTRLVALGFRHEDFVYEPGQFAMRGGILDIYSFGNEHPYRIELFGNEVDSIRIFNPETQLSERKLLQVSILPNIETRFEAKEKVSLLDFVPANTVFWFKDKDIFLGKLAHYEDKLLELLAINEGVLEQRGEDDDEPKLLTAEDFESATSWKGRINDFHQVQFSNTEGKETAADATISFRTEPQPSFNRNFDLLSANLRKWSEQHYTAYIFAENAKQLERLRVIFEDTNASVSFVPVPVSISNGFIDHDKKVLVYTDHQIFQRFYKYKIKQAYSKGKAITIKSLRELQPGDFVSHIDYGVGVYSGLQTIDVNGARQEAVRIIYKDNDVLYVGINSLHKISKYAGKEGTQPKVHKLGSDVWNRLKDKTKRQVKDIAADLIKLYAKRKAAEGFMFTPDSYLQTELEASFFYEDTPDQSKAVADVKRDMESPNPMDRLVCGDVGFGKTEVAVRAAFKAVTDSKQVAVMVPTTILAYQHFQTFSERLKDFPVNVDFLNRFKSSKDKKETLQKLEEGKIDILIGTHALMGKDVKFKDLGLYIVDEEQKFGVAAKEKLRERKLNVDTLTLTATPIPRTLQFSLMAARDLSIINTPPPNRQPVHTELIGFDEDFIRDAIYYEAERGGQVYFIHNRVQSLPSMAEKIKALCPDLEIAVAHGQMEGAKLEKTLMDFIAHKYDVICCTNIVESGVDISNANTIIINNAHQFGLSDLHQLRGRVGRSNKKAFCYLVAPSLLTLPNDSRRRLQILEEFNELGSGFQIAMRDLDIRGAGNLLGGEQSGFIADIGFEMYQKILAEAIRELKQGDFKEVFAEELERKKDYVSDCTIDTDLEILIPETYVGSITERLSLYTQLDNLETEEELQAFEAMLIDRFGPIPREVKDLFTVVRCRKIAKDLGFEKLIIKNKVMRLYFINNPDSPYYESETFHKIMGYIQTGTNQAKMKQMGTVFLLVVNHIHSMDDVKFFLEGAL*