ggKbase home page

SCNpilot_solid_1_scaffold_104_23

Organism: SCNPILOT_SOLID_1_Sphingobacteriales_41_19

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(28249..28830)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma subunit, ECF family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE18_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 79.8
  • Coverage: 193.0
  • Bit_score: 313
  • Evalue 1.70e-82
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO44916.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 82.9
  • Coverage: 193.0
  • Bit_score: 325
  • Evalue 4.70e-86
RNA polymerase, sigma subunit, ECF family similarity KEGG
DB: KEGG
  • Identity: 79.8
  • Coverage: 193.0
  • Bit_score: 313
  • Evalue 4.80e-83

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 582
ATGAAATCCCTAACCAATCTGCCTGACCAGCAATTGATCCACCTTTTTATGGGTGGAGACGCGTCTGCTCTCGAGATCCTCATTGTTCGCCACAAAGACAAGATCTACACTTCCATTTTTCTTCTGGTAAAAGACAAGTACCTGGCTGAAGACATTTTTCAGGATGTGTTTATCAGGGTTATTGACACCATTCGCAGTGGCCGCTACACAGAAGAAGGAAAATTTCTGCCCTGGGCTATGCGTATTGCCCACAACCTTTGCGTAGATCATTTCCGTAAGGTAAAACGCACGCCTGCTATTAAAACAGGTGATGATCGCGACATTTTTGAAGTGATCAATTTTTCGGAGGATGGAGTAGACCGCCGGATGATGCAGCGCCAAAGTCATGACCGCGTTCGCGAAATGCTTGATCGTTTGCCTGAAGATCAACGCGAAGTGATCATTTTAAGACATTACGCTGAATTAAGCTTTAAAGAAATTGCTACGTTAACCGATTGCAGTATCAATACCGCTTTGGGACGTATGCGTTATGGTTTAATCAACCTGCGCAAAATGATGCAGGAAAAACAAATTGCATTGTAA
PROTEIN sequence
Length: 194
MKSLTNLPDQQLIHLFMGGDASALEILIVRHKDKIYTSIFLLVKDKYLAEDIFQDVFIRVIDTIRSGRYTEEGKFLPWAMRIAHNLCVDHFRKVKRTPAIKTGDDRDIFEVINFSEDGVDRRMMQRQSHDRVREMLDRLPEDQREVIILRHYAELSFKEIATLTDCSINTALGRMRYGLINLRKMMQEKQIAL*