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SCNPILOT_SOLID_1_Microbacterium__7

SCNPILOT_SOLID_1_Microbacterium_70_7
In projects: SCNPILOT_SOLID_1  |  SCN_92

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_solid_1_UNK

Properties

Avg. coverage: 6.97 Longest contig: 30.30 Kbp Bin length: 2.24 Mbp GC content: 69.98 %
Contigs count: 477 Features count: 2476 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38 MC: 1
Displaying items 101-150 of 477 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_solid_1_scaffold_84358
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1017 bp 71.39 2.96 98.82
SCNpilot_solid_1_scaffold_96669
Species: Microbacterium sp. TS-1 (100%)
2 1794 bp 71.13 5.04 101.67
SCNpilot_solid_1_scaffold_69075
Species: Microbacterium azadirachtae (100%)
2 1153 bp 67.56 2.83 72.33
SCNpilot_solid_1_scaffold_80571
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1046 bp 65.01 2.88 88.91
SCNpilot_solid_1_scaffold_67483
Species: Microbacterium mangrovi (50%)
2 1170 bp 68.29 6.65 99.74
SCNpilot_solid_1_scaffold_58029
Species: Microbacterium sp. MRS-1 (50%)
2 1289 bp 72.92 7.59 93.56
SCNpilot_solid_1_scaffold_11785
Species: Microbacterium mangrovi (50%)
2 3733 bp 68.93 7.33 99.25
SCNpilot_solid_1_scaffold_45258
Species: Microbacterium mangrovi (100%)
2 1504 bp 69.48 4.67 99.34
SCNpilot_solid_1_scaffold_38678
Species: Microbacterium oxydans (50%)
2 1665 bp 66.49 3.92 99.46
SCNpilot_solid_1_scaffold_39961
Species: Microbacterium oleivorans (50%)
2 1630 bp 70.18 5.24 102.15
SCNpilot_solid_1_scaffold_24993
Species: Actinotalea fermentans (50%)
2 2213 bp 71.31 5.10 100.05
SCNpilot_solid_1_scaffold_20946
Species: Microbacterium maritypicum (50%)
2 2502 bp 69.18 8.73 98.68
SCNpilot_solid_1_scaffold_54337
Species: Microbacterium sp. UCD-TDU (50%)
2 1340 bp 71.27 3.56 92.46
SCNpilot_solid_1_scaffold_55364
Species: Microbacterium sp. TS-1 (50%)
2 1326 bp 70.74 7.19 98.87
SCNpilot_solid_1_scaffold_13432
Species: Microbacterium laevaniformans (50%)
2 4241 bp 68.95 6.04 100.59
SCNpilot_solid_1_scaffold_32596
Species: Microbacterium hominis (50%)
2 1859 bp 69.34 5.94 85.53
SCNpilot_solid_1_scaffold_62036
Species: Microbacterium sp. CH12i (50%)
2 1234 bp 63.78 5.90 90.68
SCNpilot_solid_1_scaffold_18887
Species: Microbacterium oxydans (50%)
2 2684 bp 68.11 7.86 92.88
SCNpilot_solid_1_scaffold_53910
Species: Microbacterium oxydans (100%)
2 1348 bp 63.80 4.47 86.13
SCNpilot_solid_1_scaffold_17137
Species: Microbacterium ginsengisoli (50%)
2 2871 bp 68.55 7.26 93.94
SCNpilot_solid_1_scaffold_19915
Species: Microbacterium mangrovi (50%)
2 2588 bp 68.28 8.24 100.04
SCNpilot_solid_1_scaffold_42317
Species: Propionibacterium freudenreichii (50%)
2 1571 bp 64.61 3.20 100.06
SCNpilot_solid_1_scaffold_55634
Species: Leucobacter sp. UCD-THU (50%)
2 1322 bp 69.06 3.80 90.54
SCNpilot_solid_1_scaffold_47516
Species: Microbacterium sp. C448 (50%)
2 1460 bp 67.12 3.61 93.90
SCNpilot_solid_1_scaffold_86687
Species: Microbacterium oleivorans (50%)
2 1000 bp 70.40 3.26 72.90
SCNpilot_solid_1_scaffold_61789
Species: Devosia riboflavina (50%)
2 1237 bp 64.03 4.46 98.71
SCNpilot_solid_1_scaffold_43281
Species: Microbacterium maritypicum (100%)
2 1547 bp 64.32 2.60 94.05
SCNpilot_solid_1_scaffold_60768
Species: Microbacterium sp. SA39 (50%)
2 1638 bp 68.56 7.05 69.11
SCNpilot_solid_1_scaffold_47529
Species: Chryseobacterium formosense (50%)
2 1460 bp 64.32 3.09 61.03
SCNpilot_solid_1_scaffold_34703
Species: Microbacterium azadirachtae (50%)
2 1785 bp 73.39 7.73 90.76
SCNpilot_solid_1_scaffold_52453
Species: Microbacterium oleivorans (50%)
2 1372 bp 70.26 6.40 87.90
SCNpilot_solid_1_scaffold_62325
Species: Microbacterium oxydans (50%)
2 1231 bp 66.45 2.85 62.88
SCNpilot_solid_1_scaffold_84933
Species: Microbacterium foliorum (50%)
2 1013 bp 69.79 3.47 94.18
SCNpilot_solid_1_scaffold_58854
Species: Microbacterium laevaniformans (50%)
2 1277 bp 71.73 3.34 100.08
SCNpilot_solid_1_scaffold_25956
Species: Microbacterium mangrovi (50%)
2 2156 bp 70.45 5.24 89.33
SCNpilot_solid_1_scaffold_74997
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1095 bp 72.79 2.75 98.63
SCNpilot_solid_1_scaffold_50622
Species: Microbacterium mangrovi (50%)
2 1403 bp 70.71 6.08 90.66
SCNpilot_solid_1_scaffold_72262
Species: Microbacterium sp. CH12i (50%)
2 1121 bp 69.76 3.36 99.82
SCNpilot_solid_1_scaffold_40594
Species: Arthrobacter sp. IHBB 11108 (50%)
2 1614 bp 66.98 8.71 85.87
SCNpilot_solid_1_scaffold_50626
Species: Microbacterium ginsengisoli (50%)
2 1403 bp 68.85 8.41 100.29
SCNpilot_solid_1_scaffold_71037
Species: Pimelobacter simplex (50%)
2 1133 bp 74.93 3.54 89.76
SCNpilot_solid_1_scaffold_16626
Species: Microbacterium testaceum (50%)
2 2931 bp 66.33 6.08 83.52
SCNpilot_solid_1_scaffold_76744
Species: Microbacterium sp. C448 (50%)
2 1387 bp 71.59 6.88 74.41
SCNpilot_solid_1_scaffold_50640
Species: Propionibacterium sp. HGH0353 (50%)
2 1403 bp 71.06 3.76 100.07
SCNpilot_solid_1_scaffold_22827
Species: Microbacterium mangrovi (50%)
2 2359 bp 71.68 7.02 91.82
SCNpilot_solid_1_scaffold_67572
Species: Microbacterium mangrovi (50%)
2 1169 bp 72.46 6.01 99.32
SCNpilot_solid_1_scaffold_78221
Species: Microbacterium ginsengisoli (50%)
2 1066 bp 66.60 4.24 100.75
SCNpilot_solid_1_scaffold_71059
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1133 bp 69.11 4.21 94.00
SCNpilot_solid_1_scaffold_42895
Species: Microbacterium sp. SUBG005 (50%)
2 1556 bp 67.61 3.55 85.60
SCNpilot_solid_1_scaffold_84208
Species: Microbacterium azadirachtae (50%)
2 1019 bp 68.01 10.59 88.91
Displaying items 101-150 of 477 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.