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SCNPILOT_SOLID_1_Microbacterium__7

SCNPILOT_SOLID_1_Microbacterium_70_7
In projects: SCNPILOT_SOLID_1  |  SCN_92

Consensus taxonomy: Microbacterium  →  Actinomycetales  →  Actinobacteridae  →  Actinobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_solid_1_UNK

Properties

Avg. coverage: 6.97 Longest contig: 30.30 Kbp Bin length: 2.24 Mbp GC content: 69.98 %
Contigs count: 477 Features count: 2476 rRNAs count: 0 tRNAs count: 27

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38 MC: 1
Displaying items 351-400 of 477 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_solid_1_scaffold_13349
Species: Microbacterium sp. MRS-1 (50%)
2 3422 bp 71.45 5.72 88.90
SCNpilot_solid_1_scaffold_51211
Species: Agreia bicolorata (50%)
2 1393 bp 68.05 3.42 97.13
SCNpilot_solid_1_scaffold_35137
Species: Microbacterium mangrovi (50%)
2 1771 bp 66.29 5.24 95.88
SCNpilot_solid_1_scaffold_9377
Species: Microbacterium mangrovi (100%)
2 4411 bp 73.20 8.59 95.83
SCNpilot_solid_1_scaffold_46119
Species: Microbacterium sp. C448 (50%)
2 1488 bp 64.11 3.54 70.97
SCNpilot_solid_1_scaffold_62463
Species: Microbacterium azadirachtae (50%)
2 1229 bp 71.36 4.49 69.08
SCNpilot_solid_1_scaffold_85120
Species: Microbacterium sp. MEJ108Y (50%)
2 1011 bp 70.13 2.98 97.03
SCNpilot_solid_1_scaffold_85888
Species: BJP_08E140C01_Actinomycetales_70_11 (50%)
2 1006 bp 72.17 3.99 99.01
SCNpilot_solid_1_scaffold_68603
Species: Microbacterium laevaniformans (50%)
2 1158 bp 70.29 2.60 93.26
SCNpilot_solid_1_scaffold_36119
Species: Microbacterium azadirachtae (50%)
2 1741 bp 72.14 10.81 95.63
SCNpilot_solid_1_scaffold_16503
Species: Microbacterium mangrovi (50%)
2 2945 bp 69.13 6.31 93.72
SCNpilot_solid_1_scaffold_55816
Species: Microbacterium azadirachtae (100%)
2 1320 bp 70.53 3.04 100.00
SCNpilot_solid_1_scaffold_40230
Species: RBG_16_Acidobacteria_64_8_curated (50%)
2 1624 bp 67.55 9.12 96.61
SCNpilot_solid_1_scaffold_68363
Species: Microbacterium sp. SUBG005 (50%)
2 1161 bp 68.48 4.54 88.11
SCNpilot_solid_1_scaffold_36647
Species: Microbacterium laevaniformans (50%)
2 1724 bp 72.45 6.70 97.45
SCNpilot_solid_1_scaffold_46652
Species: Microbacterium laevaniformans (50%)
2 1477 bp 72.44 8.50 94.65
SCNpilot_solid_1_scaffold_72670
Species: Microbacterium sp. UCD-TDU (50%)
2 1117 bp 69.11 4.04 60.25
SCNpilot_solid_1_scaffold_86102
Species: Microbacterium maritypicum (50%)
2 1004 bp 64.34 3.00 58.27
SCNpilot_solid_1_scaffold_83569
Species: Microbacterium azadirachtae (100%)
2 1023 bp 71.07 3.43 85.04
SCNpilot_solid_1_scaffold_73013
Species: Microbacterium sp. MEJ108Y (50%)
2 1113 bp 69.36 4.06 98.38
SCNpilot_solid_1_scaffold_50015
Species: Microbacterium azadirachtae (50%)
2 1414 bp 70.58 7.81 99.08
SCNpilot_solid_1_scaffold_54042
Species: Microbacterium azadirachtae (50%)
2 1345 bp 68.10 2.61 86.77
SCNpilot_solid_1_scaffold_70474
Species: Microbacterium oleivorans (50%)
2 1139 bp 70.94 7.49 96.40
SCNpilot_solid_1_scaffold_30849
Species: Microbacterium sp. SUBG005 (50%)
2 1929 bp 69.57 3.12 82.12
SCNpilot_solid_1_scaffold_36665
Species: Microbacterium mangrovi (50%)
2 1723 bp 68.78 8.16 95.24
SCNpilot_solid_1_scaffold_50535
Species: Microbacterium azadirachtae (50%)
2 1405 bp 71.17 3.93 96.73
SCNpilot_solid_1_scaffold_66575
Species: Microbacterium sp. TS-1 (50%)
2 1180 bp 70.17 4.89 100.17
SCNpilot_solid_1_scaffold_84601
Species: Microbacterium sp. SUBG005 (100%)
2 1015 bp 70.05 10.39 93.10
SCNpilot_solid_1_scaffold_74916
Species: Microbacterium laevaniformans (50%)
2 1096 bp 69.25 3.89 90.88
SCNpilot_solid_1_scaffold_119357
Species: Microbacterium mangrovi (100%)
2 1334 bp 72.86 6.96 99.40
SCNpilot_solid_1_scaffold_32823
Species: Microbacterium sp. TS-1 (50%)
2 1851 bp 70.39 7.05 92.87
SCNpilot_solid_1_scaffold_61485
Species: Microbacterium oleivorans (100%)
2 1241 bp 64.46 3.64 97.90
SCNpilot_solid_1_scaffold_84358
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1017 bp 71.39 2.96 98.82
SCNpilot_solid_1_scaffold_96669
Species: Microbacterium sp. TS-1 (100%)
2 1794 bp 71.13 5.04 101.67
SCNpilot_solid_1_scaffold_69075
Species: Microbacterium azadirachtae (100%)
2 1153 bp 67.56 2.83 72.33
SCNpilot_solid_1_scaffold_80571
Species: BJP_08E140C01_10KDA_Microbacterium_68_10 (50%)
2 1046 bp 65.01 2.88 88.91
SCNpilot_solid_1_scaffold_67483
Species: Microbacterium mangrovi (50%)
2 1170 bp 68.29 6.65 99.74
SCNpilot_solid_1_scaffold_58029
Species: Microbacterium sp. MRS-1 (50%)
2 1289 bp 72.92 7.59 93.56
SCNpilot_solid_1_scaffold_11785
Species: Microbacterium mangrovi (50%)
2 3733 bp 68.93 7.33 99.25
SCNpilot_solid_1_scaffold_45258
Species: Microbacterium mangrovi (100%)
2 1504 bp 69.48 4.67 99.34
SCNpilot_solid_1_scaffold_38678
Species: Microbacterium oxydans (50%)
2 1665 bp 66.49 3.92 99.46
SCNpilot_solid_1_scaffold_39961
Species: Microbacterium oleivorans (50%)
2 1630 bp 70.18 5.24 102.15
SCNpilot_solid_1_scaffold_24993
Species: Actinotalea fermentans (50%)
2 2213 bp 71.31 5.10 100.05
SCNpilot_solid_1_scaffold_20946
Species: Microbacterium maritypicum (50%)
2 2502 bp 69.18 8.73 98.68
SCNpilot_solid_1_scaffold_54337
Species: Microbacterium sp. UCD-TDU (50%)
2 1340 bp 71.27 3.56 92.46
SCNpilot_solid_1_scaffold_55364
Species: Microbacterium sp. TS-1 (50%)
2 1326 bp 70.74 7.19 98.87
SCNpilot_solid_1_scaffold_13432
Species: Microbacterium laevaniformans (50%)
2 4241 bp 68.95 6.04 100.59
SCNpilot_solid_1_scaffold_32596
Species: Microbacterium hominis (50%)
2 1859 bp 69.34 5.94 85.53
SCNpilot_solid_1_scaffold_62036
Species: Microbacterium sp. CH12i (50%)
2 1234 bp 63.78 5.90 90.68
SCNpilot_solid_1_scaffold_18887
Species: Microbacterium oxydans (50%)
2 2684 bp 68.11 7.86 92.88
Displaying items 351-400 of 477 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.