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SCNpilot_solid_2_scaffold_83_176

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: 186657..188792

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Afipia sp. 1NLS2 RepID=D6V306_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 711.0
  • Bit_score: 1347
  • Evalue 0.0
  • rbh
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyr similarity UNIPROT
DB: UniProtKB
  • Identity: 97.6
  • Coverage: 711.0
  • Bit_score: 1347
  • Evalue 0.0
rpoD2; RNA polymerase sigma factor RpoD; K03086 RNA polymerase primary sigma factor similarity KEGG
DB: KEGG
  • Identity: 95.6
  • Coverage: 711.0
  • Bit_score: 1319
  • Evalue 0.0
  • rbh

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Taxonomy

Afipia sp. 1NLS2 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2136
ATGGCCACAAAGGCGAAGACGGTAGCGGTCAAGGACAAGGAAAAAGAACAGAAGGCCGCCGAGACTCCCGAAAAGGATTCCGCCGAGGCGCCGTCGCCCTTGCTCGACCTCTCGGATGCTGCCGTCAAGAAGATGATCAAGCACGCGAAGAAGCGCGGCTTTGTCACCTTCGATCAGCTCAACGCGGTGCTGCCCTCCGACCAGACCTCGCCGGAGCAGATCGAGGACATCATGGCGATGCTCTCGGACATGGGCATCAACGTCTCCGAGGCCGATGACGCCAACGACGAGGACGAGGAGAAGGACGAGGCCGACGACGAGACCGACAACGAGCTTGTCGAGGTCACCTCCAAGGCCGTCACCGAGACCAAGAAGTCCGAGCCCGGCGAGCGCACCGACGATCCGGTGCGGATGTATCTGCGCGAAATGGGCACGGTGGAGTTGCTGTCGCGCGAGGGCGAAATCGCCATCGCCAAGCGCATCGAGGCCGGCCGCGAGGCGATGATCGCAGGACTGTGCGAAAGCCCGCTGACGTTTCAGGCGATCATCATCTGGCGCGACGAGCTCAACGAAGGAAAAATCTTTCTTCGCGACATCATCGACCTTGAAGCCACCTACGCCGGCCCCGAGGGCAAGAACGGCGTCAATCCGGCGATGATCGCGGGGCCGACCGGTCCCGACGGCCAGCCGACCAACGCCGTCGTCAATGGTGACGGCACCGTGCAGGTGATCGGAGCCCAGCAGGCCGCCCCCGCGCAGACCGCGCCGCAGGCCGCGACCCCGTTCCGCCCCGCGCCGGCCGCGGGCGATGACAGCGCCGCGCCGGAAGGCGAGGGCGACGATGACGATGAGTTCGAGAACCAGATGTCGCTCGCCGCGATCGAGGCCGAGCTCAAGCCGCGCGTGGTCGAGACCTTCGACAAGATCGCCTCCGAGTACAAGAAGCTGCGCCGCCTGCAGGAACAGGACATCCAGAACCAGCTGCAGAGCACGGCGGAATCGCTGTCGCCGTCGCAGGAGCGCAAGTACAAGAAGCTGAAGGACGAGATCATCGTCGAGGTGAAGTCGCTGCGCCTCAATCAGGCGCGCATCGATTCGCTCGTCGAGCAGCTTTACGACATCAACAAGCGCCTCGTGTCCTATGAGGGCCGCCTGTTCCGTTTGGGTGACGGCCACGGCGTCGGCCGCGAGGACTTCCTGAAGAACTATGTCGGCTCGGAGCTTGATCCGCGCTGGCTCAACCGTGTCTCGAAACTCGCCGCCAAGGGCTGGAAGAATTTCGTCGCGCACGAGAAGGACAGGATCAAGGACCTGCGCCACGAGATCCAGCAGCTCGCAGCGCTCACCGGCCTCGAGATCGGCGAATTCCGCAAGATCGTGCTCGGCGTGCAGAAGGGCGAGCGCGAGGCGCGGCAGGCGAAGAAGGAAATGGTGGAGGCGAACCTGCGCCTCGTCATCTCGATCGCCAAGAAATACACCAACCGCGGCCTGCAATTCCTCGACCTCATTCAGGAAGGCAACATCGGCCTGATGAAGGCGGTCGATAAATTCGAGTACCGCCGCGGCTACAAGTTCTCGACCTACGCGACGTGGTGGATCCGTCAGGCCATCACCCGCAGCATTGCGGATCAGGCCAGAACCATCCGCATCCCGGTGCACATGATCGAGACCATCAACAAGATCGTGCGCACCTCGCGCCAGATGCTCAACGAGATCGGCCGCGAGCCGACGCCGGAGGAGCTGGCCGAAAAGCTCGGCATGCCGCTGGAGAAGGTGCGCAAGGTTCTCAAGATCGCCAAGGAGCCGCTGTCGCTGGAGACCCCGGTCGGCGACGAGGAAGATTCGCACCTCGGCGATTTCATCGAGGACAAGAACGCGATCCTGCCGATCGATGCGGCGATCCAGTCGAACCTGCGCGAGACCACGACGCGGGTGCTGGCCTCGCTCACGCCGCGCGAGGAGCGCGTCTTGCGCATGCGCTTTGGCATCGGCATGAACACCGACCACACGCTGGAGGAGGTCGGCCAGCAATTCTCGGTGACGCGCGAACGCATCCGCCAGATCGAGGCGAAGGCGCTGCGCAAGCTCAAGCATCCCTCGCGCAGCCGCAAACTGCGATCATTCCTCGATAACTGA
PROTEIN sequence
Length: 712
MATKAKTVAVKDKEKEQKAAETPEKDSAEAPSPLLDLSDAAVKKMIKHAKKRGFVTFDQLNAVLPSDQTSPEQIEDIMAMLSDMGINVSEADDANDEDEEKDEADDETDNELVEVTSKAVTETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDIIDLEATYAGPEGKNGVNPAMIAGPTGPDGQPTNAVVNGDGTVQVIGAQQAAPAQTAPQAATPFRPAPAAGDDSAAPEGEGDDDDEFENQMSLAAIEAELKPRVVETFDKIASEYKKLRRLQEQDIQNQLQSTAESLSPSQERKYKKLKDEIIVEVKSLRLNQARIDSLVEQLYDINKRLVSYEGRLFRLGDGHGVGREDFLKNYVGSELDPRWLNRVSKLAAKGWKNFVAHEKDRIKDLRHEIQQLAALTGLEIGEFRKIVLGVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN*