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SCNpilot_solid_2_scaffold_228_30

Organism: SCNPILOT_SOLID_2_Afipia__34

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 12 / 38
Location: comp(32746..32994)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Afipia sp. 1NLS2 RepID=D6V6F2_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 168
  • Evalue 3.80e-39
hfq; RNA-binding protein Hfq; K03666 host factor-I protein similarity KEGG
DB: KEGG
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 168
  • Evalue 1.20e-39
RNA-binding protein Hfq {ECO:0000255|HAMAP-Rule:MF_00436}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carbo similarity UNIPROT
DB: UniProtKB
  • Identity: 98.8
  • Coverage: 82.0
  • Bit_score: 168
  • Evalue 5.40e-39

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Taxonomy

Oligotropha carboxidovorans → Oligotropha → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 249
ATGGCAGCCGATCGCGCACAGAATCTACAAGACACTTTCCTCAATCACGTTCGCAAATCGAAGATCCCGCTGACAATTTTTCTCGTCAACGGTGTCAAACTGCAGGGCATTGTCACCTGGTTCGACAATTTTTGCCTGTTGCTGCGGCGCGACGGTCATTCGCAGCTTGTTTACAAACATGCGATCTCGACCATCATGCCAGGCGCTCCGATCTCGCTGTTCGAGGGCGGCGAGGACACTCCAGCTTGA
PROTEIN sequence
Length: 83
MAADRAQNLQDTFLNHVRKSKIPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKHAISTIMPGAPISLFEGGEDTPA*