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SCNpilot_cont_1000_p_scaffold_37_269

Organism: SCNPILOT_CONT_1000_P_Sphingobacteriales_46_16

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(285147..285731)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Pedobacter arcticus RepID=UPI000314AFBE similarity UNIREF
DB: UNIREF100
  • Identity: 53.4
  • Coverage: 193.0
  • Bit_score: 234
  • Evalue 1.00e-58
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO44916.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.4
  • Coverage: 193.0
  • Bit_score: 229
  • Evalue 4.60e-57
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 52.8
  • Coverage: 193.0
  • Bit_score: 228
  • Evalue 1.80e-57

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Taxonomy

Flavihumibacter petaseus → Flavihumibacter → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 585
ATGCAAACAATCCACCATCTGTCTGACGCCGAACTGGTACATGATTTCCTGCAAGGGAACGAATGTGCATTAGAAACTCTTGTGTACCGTTACAAAGACAAGATCTATACCGCTATCTATATGCTTGTAAAAGACAAATATATAGCGGAAGATATTTTCCAGGACGCTTTTCTGAAAATGATCAAAACCATGCGCGGGGGGCGTTATTCCGAGCAGGGCAAGTTCCTGCCATGGGCCATACGTGTGGCGCACAACCTGTGTATGGACCACTTTCGCCGTTGCAGGCAGCAAACCCGCGTTACCCTGCCCGATGGCAGCGATATATCGGAACTGCTGGGTATGCAGGACGACACTACCGCCACAAGGCTGGAGCGAAGGCAGGTGCACGAAAGTGTGCGCAACCTCATAGAGCAGTTGCCCGAAGAACAGCGCGAGGTGATAGTGCTGCGTATGTATGGCGATATGAGCTTTAAAGAGATAGCCGATATCACATCGGTAAGCATCAATACGGCCCTTGGGCGTATGCGCTATGGCCTCATCAACCTGCGCAGGATGATAGAAGATAAAAAAATGGTGCTACGCTAA
PROTEIN sequence
Length: 195
MQTIHHLSDAELVHDFLQGNECALETLVYRYKDKIYTAIYMLVKDKYIAEDIFQDAFLKMIKTMRGGRYSEQGKFLPWAIRVAHNLCMDHFRRCRQQTRVTLPDGSDISELLGMQDDTTATRLERRQVHESVRNLIEQLPEEQREVIVLRMYGDMSFKEIADITSVSINTALGRMRYGLINLRRMIEDKKMVLR*