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scnpilot_solids1_trim150_scaffold_877_curated

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_877_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1324
DNA (1323bp) protein (441aa)
glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=2 Tax=Rhodanobacter denitrificans RepID=M4NAN6_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_877_curated_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1372..2307)
DNA (936bp) protein (312aa)
Sugar kinase, ribokinase n=3 Tax=Rhodanobacter denitrificans RepID=M4NAK8_9GAMM
sugar kinase, ribokinase
Sugar kinase, ribokinase {ECO:0000313|EMBL:AGG87565.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2584..3630
DNA (1047bp) protein (349aa)
Rod shape-determining protein MreB n=2 Tax=Rhodanobacter denitrificans RepID=M4NIE0_9GAMM
rod shape-determining protein MreB
Rod shape-determining protein MreB {ECO:0000313|EMBL:AGG87566.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3643..4593
DNA (951bp) protein (317aa)
Cell shape-determining protein MreC n=1 Tax=Rhodanobacter denitrificans RepID=M4NCQ3_9GAMM
rod shape-determining protein MreC
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4590..5075
DNA (486bp) protein (162aa)
Rod shape-determining protein MreD n=1 Tax=Rhodanobacter denitrificans RepID=M4NDN6_9GAMM
rod shape-determining protein MreD
Rod shape-determining protein MreD {ECO:0000313|EMBL:AGG87568.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5092..7098
DNA (2007bp) protein (669aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Penicillin-binding protein 2 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU1_9GAMM
Penicillin-binding protein 2 {ECO:0000313|EMBL:EIL98332.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_877_curated_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7095..8210
DNA (1116bp) protein (372aa)
Rod shape-determining protein RodA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFU0_9GAMM
Rod shape-determining protein RodA {ECO:0000313|EMBL:EIL98331.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
cell elongation-specific peptidoglycan biosynthesis regulator RodA
scnpilot_solids1_trim150_scaffold_877_curated_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8307..9317
DNA (1011bp) protein (337aa)
Lytic murein transglycosylase B n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFT9_9GAMM
Lytic murein transglycosylase B {ECO:0000313|EMBL:EIL98330.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
lytic murein transglycosylase B
scnpilot_solids1_trim150_scaffold_877_curated_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9314..10219
DNA (906bp) protein (302aa)
Rare lipoprotein A n=2 Tax=Rhodanobacter denitrificans RepID=M4NCQ6_9GAMM
rare lipoprotein A
Rare lipoprotein A {ECO:0000313|EMBL:AGG87572.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10295..11545
DNA (1251bp) protein (417aa)
Penicillin-binding protein 6 n=3 Tax=Rhodanobacter denitrificans RepID=M4NDP0_9GAMM
penicillin-binding protein 6
Penicillin-binding protein 6 {ECO:0000313|EMBL:AGG87573.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_11
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11542..11835
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFT6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIL98327.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_877_curated_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12019..12642
DNA (624bp) protein (208aa)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|PIRNR:PIRNR016262};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" sourc
Octanoyltransferase (Fragment) n=1 Tax=Rhodanobacter denitrificans RepID=I4WB27_9GAMM
lipoate-protein ligase B
scnpilot_solids1_trim150_scaffold_877_curated_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12652..13662
DNA (1011bp) protein (337aa)
Lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoic acid synthase {ECO:0000256|HAMAP-Rule:MF_00206}; Sulfur insertion protein LipA {ECO:0000256|HAMAP-Rule:MF_00206}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Lipoyl synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIF0_9GAMM
lipoate synthase
scnpilot_solids1_trim150_scaffold_877_curated_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13671..15917
DNA (2247bp) protein (749aa)
C-terminal processing peptidase n=3 Tax=Rhodanobacter denitrificans RepID=M4NCQ8_9GAMM
C-terminal processing peptidase
C-terminal processing peptidase {ECO:0000313|EMBL:AGG87577.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_15
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16092..17954)
DNA (1863bp) protein (621aa)
Sulfotransferase family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFT2_9GAMM
Sulfotransferase family protein {ECO:0000313|EMBL:EIL98323.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sulfotransferase family protein
scnpilot_solids1_trim150_scaffold_877_curated_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18047..20929)
DNA (2883bp) protein (961aa)
Outer membrane receptor for ferrienterochelin and colicins n=8 Tax=Rhodanobacter denitrificans RepID=M4NAP4_9GAMM
outer membrane receptor for ferrienterochelin and colicins
Outer membrane receptor for ferrienterochelin and colicins {ECO:0000313|EMBL:AGG87579.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21117..22421)
DNA (1305bp) protein (435aa)
Aspartyl/asparaginyl beta-hydroxylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFT0_9GAMM
Aspartyl/asparaginyl beta-hydroxylase {ECO:0000313|EMBL:EIL98321.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
aspartyl/asparaginyl beta-hydroxylase-like dioxygenase
scnpilot_solids1_trim150_scaffold_877_curated_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22483..24177)
DNA (1695bp) protein (565aa)
Aminopeptidase N n=3 Tax=Rhodanobacter denitrificans RepID=M4NIF4_9GAMM
aminopeptidase N
Aminopeptidase N {ECO:0000313|EMBL:AGG87581.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24218..25624)
DNA (1407bp) protein (469aa)
Leucyl aminopeptidase n=2 Tax=Rhodanobacter denitrificans RepID=M4NCR2_9GAMM
leucyl aminopeptidase
Leucyl aminopeptidase {ECO:0000313|EMBL:AGG87582.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_20
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25712..26422)
DNA (711bp) protein (237aa)
Haloacid dehalogenase superfamily enzyme, subfamily IA n=1 Tax=Rhodanobacter denitrificans RepID=M4NDP7_9GAMM
haloacid dehalogenase superfamily enzyme, subfamily IA
Haloacid dehalogenase superfamily enzyme, subfamily IA {ECO:0000313|EMBL:AGG87583.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26435..27775)
DNA (1341bp) protein (447aa)
ABC-type phosphate transport system, periplasmic component n=1 Tax=Rhodanobacter denitrificans RepID=M4NAP7_9GAMM
ABC-type phosphate transport system, periplasmic component
ABC-type phosphate transport system, periplasmic component {ECO:0000313|EMBL:AGG87584.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28001..29392)
DNA (1392bp) protein (464aa)
Periplasmic serine protease, Do/DeqQ family n=1 Tax=Rhodanobacter denitrificans RepID=M4NAL9_9GAMM
periplasmic serine protease, Do/DeqQ family
Periplasmic serine protease, Do/DeqQ family {ECO:0000313|EMBL:AGG87585.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29807..31945
DNA (2139bp) protein (713aa)
ribonucleoside-diphosphate reductase; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVM5_9GAMM
Ribonucleoside-diphosphate reductase {ECO:0000313|EMBL:EIL91266.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_877_curated_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32006..32698
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NCR6_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87587.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_25
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32797..33546
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WFS2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL98313.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_877_curated_26
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33756..33980
DNA (225bp) protein (75aa)
histidine biosynthesis protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034558E7
DNA-binding protein H-NS {ECO:0000313|EMBL:EIL90952.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
DNA-binding protein H-NS
scnpilot_solids1_trim150_scaffold_877_curated_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33977..34282)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUP2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87248.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_877_curated_28
unknown

Not on your lists

comp(34381..34566)
DNA (186bp) protein (62aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_877_curated_29
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35004..35468
DNA (465bp) protein (155aa)
Type III restriction-modification system, methyltransferase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZ11_9GAMM
Type III restriction-modification system, methyltransferase {ECO:0000313|EMBL:EED37677.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Adenine specific DNA methylase
scnpilot_solids1_trim150_scaffold_877_curated_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35836..36660
DNA (825bp) protein (275aa)
Methyltransferase type 11 n=1 Tax=Azoarcus sp. KH32C RepID=H0Q4L1_9RHOO
methyltransferase type 11
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 78 in total

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