ggKbase home page

SCN18_25_1_16_R1_B_scaffold_2704_4

Organism: SCN18_25_1_16_R1_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47_62_13

near complete RP 50 / 55 MC: 4 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 3
Location: comp(4707..4958)

Top 3 Functional Annotations

Value Algorithm Source
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 80.0
  • Bit_score: 124
  • Evalue 4.00e-26
uroporphyrinogen decarboxylase (EC:4.1.1.37) similarity KEGG
DB: KEGG
  • Identity: 69.1
  • Coverage: 81.0
  • Bit_score: 120
  • Evalue 1.50e-25
Uroporphyrinogen decarboxylase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LMK7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 72.5
  • Coverage: 80.0
  • Bit_score: 124
  • Evalue 2.80e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 252
GCGGTCGGGCTCGACTGGACGGTGCCGATCTCCACCGCGGTTGGGTTACAGCGCGAGGGACCGGTGCAGGGCAATCTCGACCCATTGCGGCTCGTTGCTGGCGGCGATGCGCTTTTCGATTCTATCGATAATATCCTGGGCGGGCTGGGCGCAGGCCCGCTGATCTTCAATCTCGGTCATGGGATCACGCCTGAAACGCCGATCGCGCATGTCGAGGCGCTCATAGGGCGGCTGAGGGAGGTGAAAGCGTGA
PROTEIN sequence
Length: 84
AVGLDWTVPISTAVGLQREGPVQGNLDPLRLVAGGDALFDSIDNILGGLGAGPLIFNLGHGITPETPIAHVEALIGRLREVKA*