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SCN18_30_10_14_R3_B_scaffold_3943_4

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(3594..4169)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma70 factor n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DE9819 similarity UNIREF
DB: UNIREF100
  • Identity: 67.4
  • Coverage: 181.0
  • Bit_score: 251
  • Evalue 4.60e-64
RNA polymerase sigma70 factor {ECO:0000313|EMBL:KJC58744.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 67.4
  • Coverage: 181.0
  • Bit_score: 254
  • Evalue 7.70e-65
putative RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 66.3
  • Coverage: 181.0
  • Bit_score: 251
  • Evalue 1.70e-64

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Taxonomy

SCNPILOT_EXPT_1000_BF_Afipia_62_8 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 576
GTGCGGGGGATCGCCAGGGTGGGGGTGGGAATGACGACGCCGGCCGAACTTGTCGGGTTGATGGCTTCGGTTGCCAAGCGTGACCGGGAGGCTTTCGAGCGCCTCTATGAAGCGACGCGCGCGCGGTTGTTCGGCGTCGTGCTGCGCGTGGTGCGCGATCAGGCGCTCGCCGAGGATGTCCTGTCCGAGACCTATGTCCGCGTCTGGAACGAGGCCGGCCAGTTCGATCCGGGCACGGGCTCGCCGATGATCTGGATGGTGTCGATGGCGCGAAACAGCGCGCTCGATATCGTGCGCAAGCGCGGCGAGGCAACGACCGCCGATCCGGATGCGATGGATCCGGCGTCCGATACGCCGGCGCCGCTGGCGCGCCGCGACATGACGGACGAACTGAAGCAACTGCTGGAGTGCGTCGGCCGTCTGGACGCGGATCGGCAGAAGCTGCTGCTGCTGGCGTATTACAACGGCTGGAGCCGCGTGGAGCTTGCGGAGAAGTTCGGCAAGCCGCTGACGCTGGTCAGGACGTGGCTGCGGCGCAGCGTGCTCGATATCCGCGACTGCCTGGGGCTGGCGTGA
PROTEIN sequence
Length: 192
VRGIARVGVGMTTPAELVGLMASVAKRDREAFERLYEATRARLFGVVLRVVRDQALAEDVLSETYVRVWNEAGQFDPGTGSPMIWMVSMARNSALDIVRKRGEATTADPDAMDPASDTPAPLARRDMTDELKQLLECVGRLDADRQKLLLLAYYNGWSRVELAEKFGKPLTLVRTWLRRSVLDIRDCLGLA*