ggKbase home page

SCN18_30_10_14_R3_B_scaffold_794_11

Organism: SCN18_30_10_14_R3_B_SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34_56_13

near complete RP 45 / 55 MC: 2 BSCG 47 / 51 ASCG 13 / 38
Location: 9657..10244

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=404589 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 30.6
  • Coverage: 193.0
  • Bit_score: 81
  • Evalue 9.10e-13
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037BB1B4 similarity UNIREF
DB: UNIREF100
  • Identity: 28.6
  • Coverage: 192.0
  • Bit_score: 87
  • Evalue 1.20e-14
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 30.6
  • Coverage: 193.0
  • Bit_score: 81
  • Evalue 1.80e-13

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34 → Bacteria

Sequences

DNA sequence
Length: 588
ATGGACATCTTGAATCGAACCTTTGTGGGGGTGCGAGTTCCCGCCGATCAACTTGCGATGATTCAAGAGAAGGTGCAACTGATCAAAAGAAAACCGGGAGTAGAAAATGTCCGCTGGAACGCCCCCTCGGAACTCCTGTTGAACCTCGCCAGTCTCGGCGAACTTGAATTGGGCACCCTTCAAGCCCTCAAGCCGGTCCTCCATCAAGCCGCCGCCATAAGTCCACCCATGAACCTTGAGATCAAGGGCTTCGGTGGACTCCCCAATCTGATCCAACCGCGCTATCTGTATGCCGGAATCGAAGGCGAAGATGCCCAGTGGCTGCCACCCCTTGTTCAAAGAATCAATCAGACCACCCAGCCGCTGACCCCGCATCGAGAAATCAAGGAGTTCAAAGCCCACATCCTGCTCGGTCGCCTGAAAACCGAGAACGAACAGTATCGTGTTGGACTAGGAAGGGCCCTCAAACTTGCCGAACAACCCGTCATCGGTCCTTGGCGGATCGATCACATCGAGCTATTGATCAGCTCGGCCAGCGAGAGCGGAATTGGCTACACCGTCGTGGAAATGATCCCACTCGGTGGTTAA
PROTEIN sequence
Length: 196
MDILNRTFVGVRVPADQLAMIQEKVQLIKRKPGVENVRWNAPSELLLNLASLGELELGTLQALKPVLHQAAAISPPMNLEIKGFGGLPNLIQPRYLYAGIEGEDAQWLPPLVQRINQTTQPLTPHREIKEFKAHILLGRLKTENEQYRVGLGRALKLAEQPVIGPWRIDHIELLISSASESGIGYTVVEMIPLGG*