ggKbase home page

SCN18_30_10_14_R2_B_scaffold_471_9

Organism: SCN18_30_10_14_R2_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_63_12

near complete RP 50 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: 10336..10815

Top 3 Functional Annotations

Value Algorithm Source
Sigma-24 subunit, ECF subfamily n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2X5_9PROT similarity UNIREF
DB: UNIREF100
  • Identity: 54.9
  • Coverage: 162.0
  • Bit_score: 169
  • Evalue 1.90e-39
Sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:EGY00127.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 54.9
  • Coverage: 162.0
  • Bit_score: 169
  • Evalue 2.70e-39
ECF subfamily RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 45.8
  • Coverage: 144.0
  • Bit_score: 122
  • Evalue 1.00e-25

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 480
ATGACCGACATCCCGGTCGGTCGGGAGCTTTGGAGCGATTTGCTGCGGCAGATCGCGCGCCGGACCCGTAACCGTACGGATGCCGAGGATCTGTTGCATTCCGCCTATCTGCGCCTGGAGCGCTATCGCACCCAGAACACGGTAAACGATCCGGCGGCGTTTCTGGTCCGCACGGCCTTCAATATAAGTATCGACAATTACCGCCACGCGAAAATCCAGCAGGATCAGGCGGAAACGCCGGATATCGAAGATACGGCCCCCCTCCAGGATGAGGTTGTGGCCGCCCGTGCTCGTCTAGCCAGGGTGAAGGCGGGGTTGAATCAGCTAACCCCCCGGACGCGCGAGATCTTCCTCATGCACCGGCTTAACAACATGAAATATCACGAAATTGCGGACCGTCTCGGCATCAGCCAAAGCGCTGTTGAAAAACACATCGCCAAAGCCGTACTTTTCCTGACGGAATGGACCGAAGGCTGGTGA
PROTEIN sequence
Length: 160
MTDIPVGRELWSDLLRQIARRTRNRTDAEDLLHSAYLRLERYRTQNTVNDPAAFLVRTAFNISIDNYRHAKIQQDQAETPDIEDTAPLQDEVVAARARLARVKAGLNQLTPRTREIFLMHRLNNMKYHEIADRLGISQSAVEKHIAKAVLFLTEWTEGW*