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SCN18_25_8_15_R2_B_scaffold_2704_12

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(10728..11282)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3KEZ1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.2
  • Coverage: 177.0
  • Bit_score: 295
  • Evalue 2.70e-77
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.3
  • Coverage: 184.0
  • Bit_score: 358
  • Evalue 3.60e-96
RNA polymerase sigma factor, sigma-70 family protein similarity KEGG
DB: KEGG
  • Identity: 80.5
  • Coverage: 174.0
  • Bit_score: 294
  • Evalue 1.70e-77

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Taxonomy

SCNPILOT_EXPT_1000_BF_Devosia_62_26 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 555
ATGGCGACCGAGACCCCCTCGTTCAAGCGCGAGATGCTGTCGACCTTGCCCAGCTTGCGCGCCTTCGCCGTTTCCCTGACCGGGAAGCACGACAAGGCGGACGATCTGGTGCAGGACACGGTGATGAAGGCCTGGGCGAAGCAATCCAGCTTCGAGATGGGCACTAACATCAAGGCCTGGCTTTTCACCATTCTGCGCAATGAGTTTTACAGCCAGATGCGCAAGCGTGGCCGCGAAGTGCAGGACACCGATGGTGCCTTCACGGAGCGCCTCTCAGTGCATCCGTCCCAGTATGGTTCGATGGACCTTGAGGACTTCAAGAAGGCCCTGGCGCAATTGCCGGATGACCAGCGCGAAGCGATCATTCTCATCGGCGCCTCGGGCTTCTCCTACGAAGAAGCTGCCGAGATCTGCGATTGCGCCGTGGGCACCATGAAAAGTCGTGTCAGCCGCGCCCGTTCGCGCCTGCAGGAAATGCTGAAGGTCAGCGGCGAGTCCGACTATGGCCCGGACGCGCTATCGACCCAGGTTACGACCAGCAATCACTCATTCTGA
PROTEIN sequence
Length: 185
MATETPSFKREMLSTLPSLRAFAVSLTGKHDKADDLVQDTVMKAWAKQSSFEMGTNIKAWLFTILRNEFYSQMRKRGREVQDTDGAFTERLSVHPSQYGSMDLEDFKKALAQLPDDQREAIILIGASGFSYEEAAEICDCAVGTMKSRVSRARSRLQEMLKVSGESDYGPDALSTQVTTSNHSF*