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SCN18_25_8_15_R2_B_scaffold_3087_3

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(2995..4374)

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.6
  • Coverage: 421.0
  • Bit_score: 807
  • Evalue 5.60e-231
Transcription termination factor Rho n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7Q6_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 89.8
  • Coverage: 421.0
  • Bit_score: 760
  • Evalue 7.40e-217
transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 89.8
  • Coverage: 421.0
  • Bit_score: 760
  • Evalue 2.10e-217

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Taxonomy

SCNPILOT_EXPT_1000_BF_Devosia_62_26 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1380
ATGGACTCCATCACGCATCCTTCCTCAGGCGCGACCGATTCCGGCGTTGCGCGGTGCATTCCCCAAAAAATAAAATCCCTTCCTTACGATTTACCCCAAGGGTCCATCGCATCCATGCAGAATATCAAGCTCAGTGAGCTGAAGGCCAAGTCCCCGGCCGAATTGCTGGCGTTCGCCGAAGAACTCGAAGTCGAGAATGCTTCGACCATGCGCAAGCAGGAGTTGATGTTCGCGATTCTGAAAGAACTCGCATCGCAGGACATCGACATCGTCGGCGAGGGCGTGGTTGAGGTCCTGCCAGACGGTTTTGGCTTCCTCCGCTCTCCTGACGCAAACTACCTTCCAGGTCCTGACGATATCTATGTCAGCCCCAGCCAGATCCGCCGCTTTGGCCTGCGGACCGGCGATACGGTCGAGGGCGAAATCCGCTCTCCCAAGGAAGGCGAGCGCTACTTCGCGCTGCTCAAAGTCAGCACCATCAATTTCGAAGACCCAGAGGCGATCCGCCACAAGGTCAATTTTGATAACCTCACCCCGCTCTATCCTGAAGAACGTCTCCGTATGGAGATGCCTGATCCGACCCTGAAAGATCGCTCGCCTCGTCTTCTCGATCTCGTGGCTCCGCTCGGCAAAGGCCAGCGCGCCTTGATAGTTGCTCCTCCGCGTACTGGTAAGACGGTATTGTTGCAGAATATTGCACAATCGATCGCGACCAATCACCCGGAATGCTATCTCATCGTTCTGCTGATCGACGAACGTCCGGAAGAAGTGACCGACATGCAGCGCTCCGTGCGCGGCGAAGTCATTTCCTCGACCTTTGACGAACCGGCATCGCGCCACGTCCAGGTCGCCGAAATGGTGATCGAAAAGGCCAAGCGCCTGGTCGAGCACAAGCGCGACGTCGTCATTCTTCTCGATTCCATCACCCGCCTCGGCCGCGCCTATAACACCGTGGTTCCGAGCTCGGGCAAGGTGCTCACCGGTGGTGTTGACGCCAATGCCCTGCAGCGCCAGAAGCGTTTCTTCGGCGCGGCGCGTAATATAGAAGAGGGCGGTTCGCTGACGATCATTTCGACGGCGCTGATCGATACCGGCTCGCGCATGGACGAAGTGATCTTCGAAGAATTCAAGGGTACCGGTAACTCGGAAATCATTCTCGACCGTAAGGTTGCCGACAAGCGTATCTTCCCGGCTCTCGACATCACCAAGTCGGGTACCCGCAAGGAAGAACTGCTGGTCGAACCCGATATTCTCAAGAAGATGTACGTGCTCCGCCGTATCCTCAACCCGATGGGCACGATCGACGCGATGGAATTCCTCATGGACAAGGTCCGCCAGACCAAGACCAATTCGGATTTCTTCGACTCGATGAACACCTAA
PROTEIN sequence
Length: 460
MDSITHPSSGATDSGVARCIPQKIKSLPYDLPQGSIASMQNIKLSELKAKSPAELLAFAEELEVENASTMRKQELMFAILKELASQDIDIVGEGVVEVLPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTVEGEIRSPKEGERYFALLKVSTINFEDPEAIRHKVNFDNLTPLYPEERLRMEMPDPTLKDRSPRLLDLVAPLGKGQRALIVAPPRTGKTVLLQNIAQSIATNHPECYLIVLLIDERPEEVTDMQRSVRGEVISSTFDEPASRHVQVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRQKRFFGAARNIEEGGSLTIISTALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRIFPALDITKSGTRKEELLVEPDILKKMYVLRRILNPMGTIDAMEFLMDKVRQTKTNSDFFDSMNT*