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SCN18_25_8_15_R2_B_scaffold_5174_4

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(3550..3918)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00054253}; Short=RNAP omega subunit {ECO:0000256|HAMAP-Rule:MF_00366};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00366, ECO:0000256|SAAS:SAAS00094401};; RNA polymerase omega subunit {ECO:0000256|HAMAP-Rule:MF_00366}; Transcriptase subunit omega {ECO:0000256|HAMAP-Rule:MF_00366}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.2
  • Coverage: 122.0
  • Bit_score: 241
  • Evalue 4.30e-61
DNA-directed RNA polymerase subunit omega n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R618_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 84.4
  • Coverage: 122.0
  • Bit_score: 204
  • Evalue 3.20e-50
DNA-directed RNA polymerase subunit omega similarity KEGG
DB: KEGG
  • Identity: 84.4
  • Coverage: 122.0
  • Bit_score: 204
  • Evalue 9.00e-51

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Taxonomy

SCNPILOT_EXPT_1000_BF_Devosia_62_26 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 369
GTGGCACGCGTCACCGTTGAAGACTGCATCGAAAAGGTCGACAATCGCTTCGACCTCGTGCTCATGGCCGCTCACCGTGCGCGCATGATTTCCTCCGGCGCTCAGATCACCGTCTCGCGCGACAACGACAAGAATCCTGTCGTTGCCCTGCGCGAAATCGGCGACGGCACCATCTCGCCGGATGACCTGCATGAAGATCTGATCCACTCGCTGCAGAAGTATGTCGAAGTGGACGAGCCCGAGAGCCACGCCGCTCCGCTCATCGAGAGCGCTGGCGACGACGACTCGATCAATTTCGATACCATCAGCGAAGAAGAACTGCTGCGCGGCATCGAGAGCCTGGCTCCGCCGGAACGCCGCGACGACTAA
PROTEIN sequence
Length: 123
VARVTVEDCIEKVDNRFDLVLMAAHRARMISSGAQITVSRDNDKNPVVALREIGDGTISPDDLHEDLIHSLQKYVEVDEPESHAAPLIESAGDDDSINFDTISEEELLRGIESLAPPERRDD*