ggKbase home page

SCN18_10_11_15_R5_B_scaffold_10_15

Organism: SCN18_10_11_15_R5_B_Rhizobiales_67_21

near complete RP 50 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: 12967..13809

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, XRE family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZC5_RHOPB similarity UNIREF
DB: UNIREF100
  • Identity: 80.6
  • Coverage: 279.0
  • Bit_score: 448
  • Evalue 2.90e-123
helix-turn-helix family protein similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 279.0
  • Bit_score: 461
  • Evalue 1.60e-127
Helix-turn-helix family protein {ECO:0000313|EMBL:AJZ62377.1}; TaxID=134537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia fungorum.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.3
  • Coverage: 279.0
  • Bit_score: 461
  • Evalue 7.90e-127

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Afipia_62_8 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 843
ATGTCGGATGGCAATTCGCTCGGTCTCTATCTCAGGAACCGGCGCACCAAACTCGATCCCGCCTCGTTCGGTTTCGCCGGTGGTCGGCGACGGACCGCCGGCCTGCGTCGCGAGGAGGTGGCGCAGCGCGCCAATATCAGCGCCACCTGGTACACGTGGCTGGAGCAGGGGCGCGGCGGCAGTCCTTCGGCCGATGTGCTCGACCGGATCGCGCGGGCGCTGACGCTGACCGAGGTCGAGCGTGAACATCTGTTCCTGCTCGGTCTCGGCCGCCCTCCCGAAGTCCGCTATCGGGGCAGCGACCCGATCACGCCGCGGCTGCAGCGCCTGCTCGACGTGCTCACCTATAGCCCGGCGATCGTCCGGACGGCGACCTGGGACGTCGTCGCCTGGAACCGCGCGGCCGCGGCCGTGCTCACCGACTATGGCGCGCTGCCGCCCGACCGGCGCAATATCCTGCGCCTGATCTTCTGCGATCCGCGGGTGCGCGCCGCCCAGTTCGATTGGCAAAGTATCGCCCGTTTCGTCGTCGGAGCCTTCCGGATCGATGCCGCGCGCGCGGGCGCCGACGCCGAGGTGGCGCCGCTGGTCGAGGAGCTCTGCCAGGCAAGCCCGGAATTCGCTTCGATGTGGCGCGACAATGACGTCAGGGCCCATGGCGACGGCACCAAGCGGCTGCGCCATCCCCGGCTCGGGCCGATCGCATTGGAATATTCCGCCTTCGCGGTGGACGGCCGGCCGGATCTCAGCCTGATCGTCTACAATCCGGCGACAGCGGCTGACCGGAGGCTCGTCCTGTCCCTGGTGGAAGCACGGACCGGGGCCGACGAGATCGCGGACTGA
PROTEIN sequence
Length: 281
MSDGNSLGLYLRNRRTKLDPASFGFAGGRRRTAGLRREEVAQRANISATWYTWLEQGRGGSPSADVLDRIARALTLTEVEREHLFLLGLGRPPEVRYRGSDPITPRLQRLLDVLTYSPAIVRTATWDVVAWNRAAAAVLTDYGALPPDRRNILRLIFCDPRVRAAQFDWQSIARFVVGAFRIDAARAGADAEVAPLVEELCQASPEFASMWRDNDVRAHGDGTKRLRHPRLGPIALEYSAFAVDGRPDLSLIVYNPATAADRRLVLSLVEARTGADEIAD*