ggKbase home page

SCN18_25_1_16_R2_B_scaffold_75

Search features with annotation key words

Displaying items 181-196 of 196 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R2_B_scaffold_75_181
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(177892..178755)
DNA (864bp) protein (288aa)
UspA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM26_NITHX
hypothetical protein
UspA {ECO:0000313|EMBL:ABE62721.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_75_182
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

178978..180519
DNA (1542bp) protein (514aa)
sensor protein FixL (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Sensor protein FixL n=2 Tax=Oligotropha carboxidovorans RepID=B6JIJ3_OLICO
SCN18_25_1_16_R2_B_scaffold_75_183
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

180503..181126
DNA (624bp) protein (208aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QM33_NITHX
fixJ; response regulator FixJ
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ABE62714.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_75_184
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181373..181606
DNA (234bp) protein (78aa)
chemotaxis protein CheY n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003699AEA
Response regulator {ECO:0000313|EMBL:EHR01932.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
two-component response regulator
SCN18_25_1_16_R2_B_scaffold_75_185
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

181703..182398
DNA (696bp) protein (232aa)
Transcriptional regulatory protein, Crp family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVI4_9BRAD
Transcriptional regulatory protein, Crp family protein {ECO:0000313|EMBL:EAQ36003.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
fixK; transcriptional regulator FixK
SCN18_25_1_16_R2_B_scaffold_75_186
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

182456..182716
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVI5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ36004.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCN18_25_1_16_R2_B_scaffold_75_187
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(182756..183229)
DNA (474bp) protein (158aa)
Ion transport 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLY4_NITHX
Ion transport 2
Ion transport 2 {ECO:0000313|EMBL:ABE62763.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCN18_25_1_16_R2_B_scaffold_75_188
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

184541..185146
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D3J0_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL07050.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCN18_25_1_16_R2_B_scaffold_75_189
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(185317..185700)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07056.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_75_190
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(185742..187091)
DNA (1350bp) protein (450aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
coproporphyrinogen III oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346AD39
hemN; coproporphyrinogen III oxidase
SCN18_25_1_16_R2_B_scaffold_75_191
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(187727..188125)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TWL3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE10851.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_75_192
unknown

Not on your lists

188436..188540
DNA (105bp) protein (35aa)

This feature has no annotations

SCN18_25_1_16_R2_B_scaffold_75_193
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188510..188926)
DNA (417bp) protein (139aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031A2A1B
Uncharacterized protein {ECO:0000313|EMBL:CCE09476.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_25_1_16_R2_B_scaffold_75_194
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

189079..190182
DNA (1104bp) protein (368aa)
Copper-containing nitrite reductase n=1 Tax=Rhodovulum sp. PH10 RepID=J6LFE7_9RHOB
Copper-containing nitrite reductase {ECO:0000313|EMBL:EJW11778.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
nirK2; dissimilatory nitrite reductase
SCN18_25_1_16_R2_B_scaffold_75_195
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190233..191093
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07J86_RHOP5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ07998.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCN18_25_1_16_R2_B_scaffold_75_196
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

191241..191945
DNA (705bp) protein (235aa)
Copper-containing nitrite reductase {ECO:0000313|EMBL:CCD93652.1}; EC=1.7.2.1 {ECO:0000313|EMBL:CCD93652.1};; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
aniA1; copper-containing nitrite reductase AniA (EC:1.7.2.1)
Copper-containing nitrite reductase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SHH5_9BRAD
Displaying items 181-196 of 196 in total

View Taxonomy