ggKbase home page

SCN18_25_1_16_R2_B_scaffold_170_19

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_300_BF_Rhizobiales_62_47-related_62_30

near complete RP 51 / 55 MC: 2 BSCG 51 / 51 ASCG 11 / 38
Location: 13104..14003

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, LysR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q216B4_RHOPB similarity UNIREF
DB: UNIREF100
  • Identity: 72.5
  • Coverage: 298.0
  • Bit_score: 425
  • Evalue 3.70e-116
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 72.5
  • Coverage: 298.0
  • Bit_score: 425
  • Evalue 1.00e-116
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD87772.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 298.0
  • Bit_score: 425
  • Evalue 5.10e-116

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → SCNPILOT_CONT_300_BF_Rhizobiales_62_47 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 900
ATGGACCGTATCGACGCCATGCACGCCTTCGTGGCGGTTGCCGATCTCAAGGGGTTTGCGCCGGCTGCCCGCAAGCTCGGCCTGTCCGCCTCTGGTGTGACCCGGCAGATCGCAGCGCTCGAAGAGCACGTTGGAGCGCGGCTATTGCAGCGGACCACGCGTTCGGTCGCGCTCACCGATGTGGGCGCGCGTTATCTGGAGCGGGCGCGGCGCATTCTCGCCGATCTCGAGGAGGCCGAGACTTCGGCGCAGGCCGAGCGCATGGCGCCGGCGGGACGGCTCGTGCTGTCGGCACCGGCGGCGTTCGGCCGTCATCACGTCAGCCCGGTGATGTCGGCCTATTTGCTGCGCTATCCCGCGGTGACCGGAGAATTGCGGCTGTCGGATCGCGTCGTCAATCTGGTGGAAGAGGGCATCGACCTTGCGGTGCGCATCGGGCATCTGCCCGATTCAAGTCTGGTGGCGCGTCATGTCGGCGACACCTGCCGCATGATCGTGGCGTCGCCGGATTATCTCGAGACGCACGGCGAGCCGCGCGTGCCCACCGATATCGCCGCGCATCAGACCATTCATTTCGGCAGCTTCGATCCGGCGACGGAATGGCCGTTCGTCGAGGACGGCAGGAACACGCGGGTGGGCTGCGCCCCGCGCTACATCACCGACAGTGCCGATACCGCGCTGTTTCATGCCGAGCAGGGCGGCGGTCTGGCGCGCGTGCTGGCCTATCAGGCCGCCGAGGCATTGGCTGCGGGAAAACTGAAGCCGGTGCTGCGCGCGTTCGAGCCACCGCCGCTACCGATCCATCTGGTCTATCCGACGTCGCGGCTGCTCTCCGCCAAGGTGCGGGCCTTCATCGAACTCGTGATGGAAGGCGCCGACTGGAATTTCTCGCGGCGGTGA
PROTEIN sequence
Length: 300
MDRIDAMHAFVAVADLKGFAPAARKLGLSASGVTRQIAALEEHVGARLLQRTTRSVALTDVGARYLERARRILADLEEAETSAQAERMAPAGRLVLSAPAAFGRHHVSPVMSAYLLRYPAVTGELRLSDRVVNLVEEGIDLAVRIGHLPDSSLVARHVGDTCRMIVASPDYLETHGEPRVPTDIAAHQTIHFGSFDPATEWPFVEDGRNTRVGCAPRYITDSADTALFHAEQGGGLARVLAYQAAEALAAGKLKPVLRAFEPPPLPIHLVYPTSRLLSAKVRAFIELVMEGADWNFSRR*