ggKbase home page

scn_reactorb_scaffold_53018_18

Organism: SCN_bioreactor_inoc_reactorb_Betaproteobacteria_68_25

near complete RP 50 / 55 BSCG 51 / 51 ASCG 14 / 38 MC: 1
Location: comp(19501..20679)

Top 3 Functional Annotations

Value Algorithm Source
Collagen triple helix repeat-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q182_ACIAP similarity UNIREF
DB: UNIREF100
  • Identity: 41.3
  • Coverage: 332.0
  • Bit_score: 215
  • Evalue 5.80e-53
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:ADX45230.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.3
  • Coverage: 332.0
  • Bit_score: 215
  • Evalue 8.10e-53
collagen like triple helix protein similarity KEGG
DB: KEGG
  • Identity: 42.5
  • Coverage: 339.0
  • Bit_score: 202
  • Evalue 1.40e-49

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidovorax avenae → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1179
ATGCACTCCCGAACCACCACGCCCTCGCGGCTGCTCATGGCCCTGTGCCTGGGCACCCTGTCCCAAACCGGCATGGCCGCCGACGTCACGGTCGTGCCGCCCGCCAGCGGCGGCTTTGCCGTACGCGATGCCGCCAACAGCACCAACCGCCTGCGCGTGACCGAGAGCGGCACGGTGCTGGTGCCCGCGCTGGGCAGCGCCACAGCACAAAGCACTGCCGCCTGCTTCGACGCCACCAGCGGCCAGCTCGGCCCCTGCAGCGCGAGCGCACAGGGCGCCACCGGGCCCACGGGACCAGGCGGCCCCACCGGGCCAGCCGGACCGACAGGGCCGCAGGGCATACAGGGTGTGCAAGGGATACAGGGCGCGCCCGGCGCGACGGGCGCCATCGGGCCTGCGGGAACTGGCGCTACCGGTGCGATGGGCCCCACGGGTCCGACTGGCACAACCGGACCGACCGGCCCCACGGGCGCCGGCATGCTGACGGGCAGCGGCGCGCCCAGCAACGCACAGGGCCAGGATGGCGATTTCTACTTTGACAGTGCAGCCACCACCCTGTATGGGCCCAAGGCATCGAGCGCATGGCCGACGCCTGGCGTGAGCCTTGCAGGCGCCACCGGGGCCACGGGAGCGGTTGGGGCCACCGGGGCCGTGGGCCCGACAGGCGCGCAAGGCCTGCAGGGATCCGCAGGCCCTACAGGCCCTACGGGCAGCATCGGCCCGACCGGGCCTATCGGCTCCACGGGTGACACCGGACCGTCCGGGCCTACGGGTCCCACCGGCCCAGCAGGGTCTGGCAGCGGTGGTTTTTTCCAAACTTATATTGTTAGTTCTACAAACCTAGGCACAGGCACCACATACCTGAATGGTACTGGCGCAAATGCCAACGAGTCAGATCAGCATCGGGCCCTCCCATTAGCCTGCACTACAGGAAAGCTGGTTGCCGCGTTAACAGGCGCCAAGAATCTGACAATTACGGTTTCCGTCCGGAAAGGCGTCAACGATGCTTTTGGGGATCTCGGATTGACCTGCGCGTTATCGTCAGCCAATCCAACATGTAACATGTCTGGAGCCATCAATGTGGCAGAAGGAAATACCGTTGGAGCCCAGGTCAACCTTGGAAGTGCGAGCTTCTCCGGAACATCAACAGGGCTGCGTGTAACCTTCATGTGCCAATGA
PROTEIN sequence
Length: 393
MHSRTTTPSRLLMALCLGTLSQTGMAADVTVVPPASGGFAVRDAANSTNRLRVTESGTVLVPALGSATAQSTAACFDATSGQLGPCSASAQGATGPTGPGGPTGPAGPTGPQGIQGVQGIQGAPGATGAIGPAGTGATGAMGPTGPTGTTGPTGPTGAGMLTGSGAPSNAQGQDGDFYFDSAATTLYGPKASSAWPTPGVSLAGATGATGAVGATGAVGPTGAQGLQGSAGPTGPTGSIGPTGPIGSTGDTGPSGPTGPTGPAGSGSGGFFQTYIVSSTNLGTGTTYLNGTGANANESDQHRALPLACTTGKLVAALTGAKNLTITVSVRKGVNDAFGDLGLTCALSSANPTCNMSGAINVAEGNTVGAQVNLGSASFSGTSTGLRVTFMCQ*