ggKbase home page

SCN18_30_10_14_R2_B_scaffold_9552_2

Organism: SCN18_30_10_14_R2_B_Rhizobiales_63_8

near complete RP 44 / 55 MC: 5 BSCG 48 / 51 MC: 8 ASCG 11 / 38 MC: 3
Location: 458..1183

Top 3 Functional Annotations

Value Algorithm Source
Putative GntR transcriptional regulator n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PU77_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 37.2
  • Coverage: 239.0
  • Bit_score: 155
  • Evalue 5.70e-35
transcriptional regulator, GntR family similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 206.0
  • Bit_score: 155
  • Evalue 1.60e-35
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AGU52934.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 41.7
  • Coverage: 206.0
  • Bit_score: 155
  • Evalue 8.00e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 726
ATGCCGGCGAAAGCGGAAGTCGAATCGGATTTCGGGACAGCCTCTCCGGAGAAGGCCGCCACGCTCAGCCTCGCGAAGGTGAACCGCGTCGATTCGCTGGGCGACCAGGCGGTGGCAAGCCTGCGCGGCGCCTTGCGGCGCGGCGCGCTTCTGCCCGGTCAGCGCCTCACCGTCCGCGAGATCGCCGATACGCTCGACATCAGCCTGACCCCGGCGCGCGAAGCGCTCAACCGGTTGCTGGCGGAAGGCGTCCTCGATCAGACTCCGGACCGTGTCGCGGTGGTCCCCCTCCTCACCAGGGAGCGCTATGGCGAGATTTGCGCCATCCGGTTCGACCTCGAAGGAATGGCGGCCAGGGAAGGTTGCGCGCGGCTTTCGGCATCCGATCTCGATCACCTGAAGGAGCTTTACGAGCGGCATGCCTCCGCCTATCGCTCGCGCGATGCCAGGACCTCGCTTCACCTCAACGAGGAATTCCATTTCACCATCTATCGCGCCTGCGCGATGCCGACCCTGCTCCAGATACTGGAAACCATGTGGCTGAGGGTCGGGCCGTCTATGAACTTCCTCTTCACGGCCTCCTATGATCCGGACTGGACCGGCGGTTCGCATCACCAGGCGATGCTGGACGCCGTCGCCGCCGGCGACGCGGCGGCACTGGAGCGGGCCGTGCGGGGCGATCTTATCGACGGACGCGCCCGCCTGATGCCGCATCTTCCGGACTGA
PROTEIN sequence
Length: 242
MPAKAEVESDFGTASPEKAATLSLAKVNRVDSLGDQAVASLRGALRRGALLPGQRLTVREIADTLDISLTPAREALNRLLAEGVLDQTPDRVAVVPLLTRERYGEICAIRFDLEGMAAREGCARLSASDLDHLKELYERHASAYRSRDARTSLHLNEEFHFTIYRACAMPTLLQILETMWLRVGPSMNFLFTASYDPDWTGGSHHQAMLDAVAAGDAAALERAVRGDLIDGRARLMPHLPD*