ggKbase home page
Advanced Search
Search Help

SCN18_30_10_14_R2_B_scaffold_9712_1

Organism: SCN18_30_10_14_R2_B_Rhizobiales_63_8

near complete RP 44 / 55 MC: 5 BSCG 48 / 51 MC: 8 ASCG 11 / 38 MC: 3
Location: comp(10..4140)

Top 3 Functional Annotations

View all annotations
Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.2
  • Coverage: 1374.0
  • Bit_score: 2514
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F4E4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.8
  • Coverage: 1374.0
  • Bit_score: 2502
  • Evalue 0.0
DNA-directed RNA polymerase, beta subunit similarity KEGG
DB: KEGG
  • Identity: 91.8
  • Coverage: 1374.0
  • Bit_score: 2501
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 4131
ATGGCCCAGACCCAGACGTTTAATGGCCGCAGGCGCGTGCGCAAGTTTTTCGGCAAGATCCCCGAAGTCGCGGAGATGCCGAACCTGATCGAGGTCCAGAAGGCTTCCTACGACCAGTTTCTCATGGTCGAGGAGCCCGAGGGCGGCCGTCCGAACGAAGGTCTGCAGGCGGTTTTCAAGTCCGTCTTCCCGATTTCCGATTTCTCGGGATCTTCGATGCTCGAATTCGTCAAATACGAGTTCGAGGGGCCGAAGTTCGACGTCGACGAATGCCGTCAGCGTGACCTGACCTATGCGGCGCCGCTGAAGGTGACGCTGCGCCTCATCGTGTTCGATATCGACGAGGACACGCAGGCCAAGTCCATCAAGGACATCAAGGAGCAGGACGTCTATATGGGCGACATGCCGCTCATGACGTCGAACGGCACTTTCATCATCAACGGCACCGAGCGCGTGATCGTCTCGCAGATGCACCGTTCGCCGGGCGTCTTCTTCGATCACGACAAGGGCAAGTCGCATTCGTCAGGCAAGCTGCTCTTCGCCGCGCGCGTCATTCCCTATCGCGGATCGTGGCTCGATATCGAGTTCGATTCCAAGGACATCGTGCATGCGCGCATCGATCGCCGCCGCAAGATCCCGGTGACCAGCCTTCTGATGGCGCTCGGCATGAACGGCGAGGAGATCCTGTCTACCTACTACGACAAGATCACCTATCAGCGTGACGGTGACCATTGGCGTATCCCCTTCAACGTCGAGCGTTTCCGCGGCCTGAAGGCCGTCGGCGACCTCGTCGACGCCGACACGGGCGAGGTCGTGGTGGAAGCCGGCAAGAAGATCACCGCGCGCCAGGCTCGCCAGCTTGCCGAAAAGGGCCTGAAGGCGATCAAGGCGACCGACGAGGACCTTATCGGCTCCTACATCGCCGAGGATATCGTCAACCCGGAGACGGGCGAGATCTATCTCGAAGCCGGCGATGAGCTGGAGATGACGGTCGATGCCAAGTCGGGCGAGCGCAAGGGCAATCTTGTCGAACTCCTGGCCTCGGGCGCGGACGAGATCGAGATCCTCGACATCGATCATGTCAATGTCGGCGCCTATATCCGCAACACGCTGGCCGTAGACAAGAACGAGTCGCGCCAGGAAGCGCTGTTCGACATCTACCGGGTGATGCGCCCGGGCGAGCCGCCGACCCTCGAGACGGCGGAGGCGATGTTCAATTCGCTGTTCTTCGACAGCGAGCGTTACGACCTGTCGGCCGTTGGCCGCGTCAAGATGAACATGCGTCTCGAACTCGACTGCCCCGATACGGTGCGCGTGCTGCGCAAGGAGGATATCCTTGCGGTCGTCAAGACGCTGGTCGAACTGCGCGACGGCAAGGGCGAGATCGACGATATCGACAATCTCGGCAACCGCCGTGTTCGCTCGGTCGGCGAATTGATGGAGAACCAGTACCGCGTCGGCCTGCTCCGCATGGAGCGCGCGATCAAGGAGCGTATGTCCTCGATCGAGATCGACACGGTCATGCCGCAGGACCTGATCAACGCCAAGCCGGCGGCTGCCGCCGTGCGCGAGTTCTTCGGTTCCTCGCAGCTCTCGCAATTCATGGACCAGACCAACCCGCTCTCCGAGATCACGCACAAGCGTCGTCTCTCGGCGCTCGGGCCGGGCGGTCTGACCCGCGAGCGTGCCGGCTTCGAGGTGCGCGACGTGCACGTCACACATTACGGCCGCATCTGCCCGATCGAGACGCCGGAAGGCCCGAATATCGGCCTTATCAACAGCTTGGCGACCTTTGCTCGCGTCAACAAATACGGCTTCATCGAGAGTCCGTATCGCAAGATCGTTGACGGCAAGGTGTCAAGCGAGGTCGTCTATCTGTCGGCGATGGAGGAGGCCAAGCACTATGTGGCCCAGGCCAACGCCGAGCTCGACAAGAACGGCGCCTTCGCCGAGGAATTCGTCATCTGTCGCCATGCCGGCGAGGTGATGATGGCGCCGCGCGAGAACGTCGATTTGATGGACGTTTCGCCGAAGCAGATGGTGTCGGTTGCCGCGGCGCTCATTCCGTTCCTCGAGAACGATGACGCCAACCGCGCCCTGATGGGCTCGAACATGCAGCGTCAGGCCGTGCCGCTGGTGCGCGCCGAGGCTCCGTTCGTCGGCACCGGCATGGAGCCGGTGGTGGCGCGCGATTCCGGCGCCGCGATCGGTGCCCGCCGGGGTGGCGTGGTCGACCAGGTCGACGCGACGCGTATCGTCATCCGCGCGACCGAGGATATCGAGCCGGGCAGGTCCGGCGTCGACATCTACCGGCTGCAGAAGTTCCAGCGGTCGAACCAGTCGACCTGCATCAACCAGCGCCCGCTGGTACGCATGGGCGACCGCGTGAACAAGGGCGACATCATTGCCGACGGTCCTTCGACCGATCTTGGCGATCTGGCGCTCGGCCGTAACGTACTCGTCGCGTTCATGCCGTGGAACGGCTACAACTACGAGGACTCCATCCTGCTCTCCGAGCGCATCGTCGCCGACGATGTCTTCACCTCGATCCACATCGAGGAGTTCGAGGTCATGGCGCGCGACACCAAGCTCGGGCCGGAAGAGATCACGCGCGACATTCCGAACGTCTCGGAAGAGGCGCTGAAGAACCTCGATGAAGCCGGTATCGTCTATATCGGCGCGGAAGTGCAGCCGGGCGACATACTGGTCGGCAAGATCACGCCGAAGGGCGAAAGCCCGATGACGCCGGAAGAGAAGCTTCTGCGCGCCATCTTTGGCGAGAAGGCTTCCGATGTCCGTGACACCTCCATGCGCATGCCGCCTGGGGCGTTCGGCACGGTCGTGGAAGTGCGCGTCTTCAACCGCCACGGCGTGGAGAAGGACGAGCGCGCCATGGCGATCGAGCGCGAGGAGATCGAGCGTCTCGCCAAGGACCGCGACGACGAGCAGGCGATCCTCGACCGCAACGTCTACAGCCGTCTCGGCGATATGCTCGAGGGCAAGGAGGCGATTGCCGGCCCGAAGGGCTACAAGAAGGGCTCCAGGCTGACCGCCGAGCTGCTGGCTGAGTATCCGCGTTCGCAGTGGTGGCAGTTCGCCGTCGAGGACGGCAAGCTGCAGGGCCAGCTCGAAGCGCTACGTGGCCAGTACGACGATTCCAAGAGTGCGCTCGAGCAGCGCTTCATGGACAAGGTCGAGAAGGTGCAGCGCGGCGACGAGATGCCGCCCGGCGTGATGAAGATGGTCAAGGTCTTCGTCGCGGTGAAGCGCAAGATGCAGCCCGGCGACAAGATGGCCGGCCGCCACGGCAACAAGGGCGTGGTGTCGCGCATCGTGCCGGTCGAGGACATGCCGTTCCTCGAGGACGGCACGCATGTCGACATCGTGCTCAACCCGCTCGGCGTGCCGAGCCGCATGAATGTCGGCCAGATCCTCGAGACGCATCTCGGCTGGGCCTGCGCCGGCATGGGCAGGCAGATCGGCGAACTGATCGAGGCCTACAAGGAGAACGGCAACATCAAGCCGCTGAGGGCCAAGATCGAGGAGCTGATCCCCGCGAACGACCGCAACGAGCCGGTAAAGAGCTACGACGACGAGTCGGTCGTCCGTCTCGCCGACCAGATGAAGCGCGGCGTTTCCATCGCCACGCCCGTCTTCGACGGAGCGCACGAGGCCGACATCAACGGCATGCTGGAAGAGGCGGGCCTCAACAGCAGCGGCCAGTCGACGCACTATGACGGACGCACGGGCGAGCCGTTCGATCGCAAGGTGACGGTGGGCTACATATATATGCTCAAGCTGCACCAGCTCGTGGACGACAAGATCCACGCGCGTTCGATCGGACCGTACAGCCTGGTCACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTTGGCGGCCAGCGTTTCGGCGAGATGGAGGGGTGGGCGCTCGAAGCCTATGGCGCCGCCTACACGCTGCAGGAGATGCTGACGGTGAAGTCGGACGACGTGGCCGGCCGCACCAAGGTCTACGAGGCCATCGTACGCGGCGACGACACGTTCGAGGCGGGCATCCCCGAATCCTTCAACGTGCTGGTCAAGGAGCTGCGCTCCCTCGGCCTCAACGTCGAACTGAACCAGTCGATCACCTGA
PROTEIN sequence
Length: 1377
MAQTQTFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPEGGRPNEGLQAVFKSVFPISDFSGSSMLEFVKYEFEGPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTQAKSIKDIKEQDVYMGDMPLMTSNGTFIINGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVIPYRGSWLDIEFDSKDIVHARIDRRRKIPVTSLLMALGMNGEEILSTYYDKITYQRDGDHWRIPFNVERFRGLKAVGDLVDADTGEVVVEAGKKITARQARQLAEKGLKAIKATDEDLIGSYIAEDIVNPETGEIYLEAGDELEMTVDAKSGERKGNLVELLASGADEIEILDIDHVNVGAYIRNTLAVDKNESRQEALFDIYRVMRPGEPPTLETAEAMFNSLFFDSERYDLSAVGRVKMNMRLELDCPDTVRVLRKEDILAVVKTLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHVTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESPYRKIVDGKVSSEVVYLSAMEEAKHYVAQANAELDKNGAFAEEFVICRHAGEVMMAPRENVDLMDVSPKQMVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEPVVARDSGAAIGARRGGVVDQVDATRIVIRATEDIEPGRSGVDIYRLQKFQRSNQSTCINQRPLVRMGDRVNKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMAIEREEIERLAKDRDDEQAILDRNVYSRLGDMLEGKEAIAGPKGYKKGSRLTAELLAEYPRSQWWQFAVEDGKLQGQLEALRGQYDDSKSALEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKRKMQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDIVLNPLGVPSRMNVGQILETHLGWACAGMGRQIGELIEAYKENGNIKPLRAKIEELIPANDRNEPVKSYDDESVVRLADQMKRGVSIATPVFDGAHEADINGMLEEAGLNSSGQSTHYDGRTGEPFDRKVTVGYIYMLKLHQLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEGWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKELRSLGLNVELNQSIT*