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2019_SCN_bioreactor_t3_biofilm_scaffold_56425_8

Organism: 2019_SCN_bioreactor_t3_biofilm_Novosphingobium_sp_MD-1_67_8

near complete RP 43 / 55 MC: 1 BSCG 42 / 51 MC: 3 ASCG 9 / 38 MC: 2
Location: 8116..9327

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 99.8
  • Coverage: 403.0
  • Bit_score: 800
  • Evalue 1.00e-228
Ribonuclease D n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8P2_NOVAD similarity UNIREF
DB: UNIREF100
  • Identity: 89.9
  • Coverage: 404.0
  • Bit_score: 734
  • Evalue 2.90e-209
ribonuclease D similarity KEGG
DB: KEGG
  • Identity: 89.9
  • Coverage: 404.0
  • Bit_score: 734
  • Evalue 8.20e-210

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Taxonomy

Novosphingobium sp. MD-1 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1212
ATGAAGATACATTCGCTGATCACCACCACCGACGCTCTCGCCGCCTTGTGCGAACGCCTCGCGAAATCCGATTTCGTCACCGTCGACACGGAATTCATGCGCGAGAACACCTATTGGCCCGAACTCTGCCTGGTGCAGATCGCCAATACCGAGGAAGCCGCCGCAGTCGATCCGCTCGCGCCGGGAATAGACCTTTCCCCGCTGCTCGACCTGATGGTCGACAATGAGGAGGTGCTCAAGGTCTTCCACGCCGGCGGGCAAGACGTGGAAATCATCTACAACCTCACCGGCAAGACCCCGCACCCGATCTTCGACACGCAGATCGCGATGATGGCGGTGAGCCAGTCGGAACAGATCGGCTATTCCAACCTCGTCGAAAGCTGGCTGGGCCTGTCGATCGACAAGGGCGCGCGCTTCACCGACTGGTCGCGCCGGCCGCTCACCGAACGCCAGATCGAATACGCGATCGGCGACGTGACGCACCTGTCGAAGATCTTTCCCAAGCTGCTCAAGCGCCTGATCAAGACCGGGCGCGGCGAATGGCTCGACATCGAGATGGAAAAGCTGGCGGACCCGGCCAACTACAAGTCCGATCCGCAGACCGTATGGCAGAAGATCCGCCCCCCCAGCCGCAATCCCGCAGTGCTGGGCCGGATGCGCGCCATCGCCGCCTGGCGCGAGGCCGAGGCAATGGACAAGAACATTCCGCGCGGCCGCATCATGCGCGATGAAACGCTGGCCGACATTGCCAGCCACCCCCCGCGCGAACAGCACGAACTCGCCAAGGTGCGCGGGCTTTCGAGCGGATGGAAGGACAACGAGATCGGCCGCCGCCTGATGCAAACGCTCGCCGAGGCTAAGCCGCTGACCGAAGCCGAAATGCCGCCCAAGGCGCCGCGCGGCGCGCCACTGGGCAAGGAAGGCGCGCTGGTGGCCGACCTGCTCAAGCTGCTGCTCAAGATCCGCAGCCGCGAGATCGACATCGCCGCCCGCCTGCTGGCGCGCAGCGACGATCTGGAGGCGCTGGCCGCCGGGCAGCGGCGCAACCTGCCGATCCTGGAAGGATGGCGCTTCGAGCAGTTCGGGCGCGACGCGCTCGATCTCGTCGAGGGCAAGCTGGCCTTCGCGGTCGTGGGCGGCAAGCTGAAGATGGCGCACATCGACGACATCGGCGGCGGCAGTGCGGCCGAACCGGTCGCGCATATCGACTGA
PROTEIN sequence
Length: 404
MKIHSLITTTDALAALCERLAKSDFVTVDTEFMRENTYWPELCLVQIANTEEAAAVDPLAPGIDLSPLLDLMVDNEEVLKVFHAGGQDVEIIYNLTGKTPHPIFDTQIAMMAVSQSEQIGYSNLVESWLGLSIDKGARFTDWSRRPLTERQIEYAIGDVTHLSKIFPKLLKRLIKTGRGEWLDIEMEKLADPANYKSDPQTVWQKIRPPSRNPAVLGRMRAIAAWREAEAMDKNIPRGRIMRDETLADIASHPPREQHELAKVRGLSSGWKDNEIGRRLMQTLAEAKPLTEAEMPPKAPRGAPLGKEGALVADLLKLLLKIRSREIDIAARLLARSDDLEALAAGQRRNLPILEGWRFEQFGRDALDLVEGKLAFAVVGGKLKMAHIDDIGGGSAAEPVAHID*