ggKbase | organisms

Consensus taxonomy: Clostridiales → Clostridia → Firmicutes → Bacteria

Metagenomic Context

Parent: SCN_bioreactor_inoc_reactorb_UNK

Properties

Avg. coverage: 6.53 Longest contig: 62.21 Kbp Bin length: 2.77 Mbp GC content: 32.54 %

Contigs count: 373 Features count: 2831 rRNAs count: 0 tRNAs count: 15

Genome completeness

near complete RP 39 / 55 MC: 1 BSCG 45 / 51 MC: 3 ASCG 12 / 38 MC: 3

Displaying items 251-300 of 373 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scn_reactorb_scaffold_68722 Order: Clostridiales (100%)	3	4488 bp	32.69	6.45	94.18
scn_reactorb_scaffold_106661 Order: Clostridiales (66.67%)	3	1621 bp	36.21	5.64	85.13
scn_reactorb_scaffold_146432 Order: Clostridiales (100%)	3	2362 bp	33.66	6.29	99.20
scn_reactorb_scaffold_98562 Order: Clostridiales (100%)	3	2114 bp	32.17	5.89	88.27
scn_reactorb_scaffold_85002 Order: Clostridiales (100%)	3	1752 bp	31.05	4.97	86.30
scn_reactorb_scaffold_36334 Order: Clostridiales (100%)	3	1819 bp	31.34	5.11	86.26
scn_reactorb_scaffold_2242 Order: Clostridiales (100%)	3	2582 bp	33.42	6.74	80.75
scn_reactorb_scaffold_135778 Order: Clostridiales (66.67%)	3	1259 bp	30.02	4.41	90.07
scn_reactorb_scaffold_150999 Order: Clostridiales (66.67%)	3	2286 bp	33.46	6.43	67.76
scn_reactorb_scaffold_86510 Order: Clostridiales (66.67%)	3	2282 bp	31.03	5.59	86.24
scn_reactorb_scaffold_132102 Species: Clostridium sp. Maddingley MBC34-26 (50%)	2	1207 bp	32.64	5.72	76.55
scn_reactorb_scaffold_73022 Species: Oribacterium parvum (50%)	2	2500 bp	32.68	5.46	86.40
scn_reactorb_scaffold_7135 Species: Dehalobacter sp. CF (50%)	2	1048 bp	35.59	4.58	44.37
scn_reactorb_scaffold_7171 Species: Alkaliphilus oremlandii (50%)	2	1624 bp	30.60	7.48	78.88
scn_reactorb_scaffold_129505 Species: [Clostridium] hylemonae (50%)	2	2344 bp	32.38	5.70	95.61
scn_reactorb_scaffold_42944 Species: Clostridium sp. ASBs410 (100%)	2	3607 bp	31.41	6.74	89.66
scn_reactorb_scaffold_111625 Species: Caldisalinibacter kiritimatiensis (50%)	2	1702 bp	32.61	5.82	89.89
scn_reactorb_scaffold_114780 Species: Caloramator australicus (50%)	2	1768 bp	33.09	6.45	99.10
scn_reactorb_scaffold_170356 Species: Eubacterium sp. CAG:38 (50%)	2	3509 bp	33.09	5.69	96.69
scn_reactorb_scaffold_46701 Species: Clostridium cellulovorans (50%)	2	1007 bp	30.59	3.87	57.20
scn_reactorb_scaffold_24615 Species: BJP_IG2157_Clostridiales_35_16 (100%)	2	1779 bp	30.97	7.00	75.21
scn_reactorb_scaffold_65763 Species: Clostridiales bacterium oral taxon 876 (50%)	2	1565 bp	34.06	4.70	98.72
scn_reactorb_scaffold_85536 Species: [Clostridium] clariflavum (50%)	2	1041 bp	30.45	4.03	89.91
scn_reactorb_scaffold_109306 Species: Peptoclostridium difficile (100%)	2	2524 bp	32.69	5.35	81.54
scn_reactorb_scaffold_4427 Species: Caldisalinibacter kiritimatiensis (50%)	2	2373 bp	34.72	6.32	94.44
scn_reactorb_scaffold_150082 Species: Marvinbryantia formatexigens (50%)	2	1368 bp	29.75	4.71	60.75
scn_reactorb_scaffold_102247 Species: Lachnoclostridium phytofermentans (50%)	2	3088 bp	34.94	6.46	92.00
scn_reactorb_scaffold_114879 Species: Caldisalinibacter kiritimatiensis (50%)	2	2774 bp	31.65	8.71	67.16
scn_reactorb_scaffold_16740 Species: Clostridium baratii (50%)	2	1071 bp	31.93	5.74	73.39
scn_reactorb_scaffold_132387 Species: Clostridium sulfidigenes (50%)	2	2094 bp	33.33	7.74	80.09
scn_reactorb_scaffold_108157 Species: Clostridium sp. D5 (50%)	2	1491 bp	30.99	5.23	65.19
scn_reactorb_scaffold_26984 Species: Caldisalinibacter kiritimatiensis (50%)	2	1287 bp	34.65	4.66	98.83
scn_reactorb_scaffold_15416 Species: Ruminococcus callidus (50%)	2	1342 bp	33.83	4.36	80.25
scn_reactorb_scaffold_145908 Species: Alkaliphilus oremlandii (50%)	2	2292 bp	36.17	5.56	97.91
scn_reactorb_scaffold_80369 Species: Caldisalinibacter kiritimatiensis (50%)	2	2264 bp	29.99	5.10	86.40
scn_reactorb_scaffold_58481 Species: Caldisalinibacter kiritimatiensis (100%)	2	1396 bp	31.38	5.05	96.28
scn_reactorb_scaffold_158425 Species: Clostridium pasteurianum (50%)	2	1061 bp	28.84	3.68	91.89
scn_reactorb_scaffold_17822 Species: Caldisalinibacter kiritimatiensis (50%)	2	2089 bp	36.29	5.96	84.87
scn_reactorb_scaffold_108250 Species: Caldisalinibacter kiritimatiensis (50%)	2	1476 bp	32.38	5.08	74.80
scn_reactorb_scaffold_99239 Species: Filifactor alocis (50%)	2	1900 bp	36.42	4.34	81.95
scn_reactorb_scaffold_88920 Species: Clostridium botulinum (100%)	2	2217 bp	33.24	5.14	89.99
scn_reactorb_scaffold_108320 Species: Caldisalinibacter kiritimatiensis (50%)	2	1701 bp	34.27	6.17	87.65
scn_reactorb_scaffold_136429 Species: Clostridium sp. ASF502 (50%)	2	2724 bp	31.46	7.10	76.10
scn_reactorb_scaffold_31980 Species: Ethanoligenens harbinense (50%)	2	1293 bp	34.65	7.19	83.76
scn_reactorb_scaffold_106294 Species: [Clostridium] saccharolyticum (50%)	2	1813 bp	34.20	6.37	71.81
scn_reactorb_scaffold_83384 Species: Caloranaerobacter azorensis (100%)	2	1589 bp	33.86	5.95	89.30
scn_reactorb_scaffold_155059 Species: Clostridium botulinum (50%)	2	1663 bp	36.32	5.86	86.95
scn_reactorb_scaffold_80632 Species: Eubacterium sp. CAG:786 (50%)	2	1057 bp	31.32	5.39	55.63
scn_reactorb_scaffold_52278 Species: BJP_IG2103_Clostridiales_50_15 (100%)	2	1165 bp	35.45	4.76	86.01
scn_reactorb_scaffold_63308 Species: Gottschalkia acidurici (50%)	2	1242 bp	31.32	5.19	74.40

Displaying items 251-300 of 373 in total

2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

2019_SCN_bioreactor_inoc_reactorb_Clostridiales_33_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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