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cn_combo_scaffold_36_125

Organism: CN-SCN_Agrobacterium_19x

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: comp(144936..145595)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1J0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 219.0
  • Bit_score: 435
  • Evalue 3.40e-119
RNA polymerase sigma factor {ECO:0000313|EMBL:EKF58985.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium similarity UNIPROT
DB: UniProtKB
  • Identity: 99.5
  • Coverage: 219.0
  • Bit_score: 435
  • Evalue 4.80e-119
DNA-directed RNA polymerase specialized sigma subunit, sigma24 similarity KEGG
DB: KEGG
  • Identity: 58.7
  • Coverage: 184.0
  • Bit_score: 207
  • Evalue 5.50e-51

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Taxonomy

Agrobacterium albertimagni → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 660
ATGGACGTGGCGATGATGAGCGGCAGTTCTTCGACGGGCGCATCTGGTGCAGGTTGCCAAATCAAGCGGGTGAGCTACTTTCCGCGCAGGTTCTTGGAAGGAAGCTGGATGGAGAATGAGCAAGATAAGCTCGGTGCGGCGCTGAAAGCCTGTGCTGCAGGGGATCGCAAAGGCCTGGCCTTGATCTATGAGAGCGAGGCGCCTCGCATGGTCACGGTGGCTGAGCGTATCCTGCGGCGCCACGATCTGGCGGAAGAGATCGTCCAGGAGGCCTTCCTGCAGATTTGGAACAAGGCCTGGCAGTACGACCCATCCCGCGGCTCGGCACGAGGCTGGATCTTCGCCATCGTTCGATCACGCTCGCTGAATGCGCTCCGGGATGGAGGTCGGGAAGATCTGACCGAGACGGACAGCCTTGAGCGACTGCAGGACGAGGGAGCTGACGCTCTCTATCACGATCTGTTCGATCAGCTCGACACCGCAAGTCGCTTGCGCGCCTGTCTCGGACGGCTCGACGGACTGCGTCGGAAGACGGTCATGATGGCTTATGTCTCGGGTTACAGCCACGGCGAGATCGCCGGTCGCTTGAAATTGCCGCTGGGAACCGCCAAGGCCTGGATCCGCCGATCGCTGGTCGCGCTGAGGGAGTGCATGGCATGA
PROTEIN sequence
Length: 220
MDVAMMSGSSSTGASGAGCQIKRVSYFPRRFLEGSWMENEQDKLGAALKACAAGDRKGLALIYESEAPRMVTVAERILRRHDLAEEIVQEAFLQIWNKAWQYDPSRGSARGWIFAIVRSRSLNALRDGGREDLTETDSLERLQDEGADALYHDLFDQLDTASRLRACLGRLDGLRRKTVMMAYVSGYSHGEIAGRLKLPLGTAKAWIRRSLVALRECMA*