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cn_combo_scaffold_923_25

Organism: CN-SCN_Agrobacterium_19x

near complete RP 45 / 55 MC: 1 BSCG 46 / 51 MC: 1 ASCG 11 / 38 MC: 1
Location: 27428..28216

Top 3 Functional Annotations

Value Algorithm Source
Spermidine/putrescine transport system permease protein PotC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEK0_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 83.2
  • Coverage: 262.0
  • Bit_score: 431
  • Evalue 7.70e-118
ABC-type spermidine/putrescine transport system permease component II {ECO:0000313|EMBL:EYR79365.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sh similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 262.0
  • Bit_score: 431
  • Evalue 1.10e-117
potC; spermidine/putrescine transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 72.8
  • Coverage: 261.0
  • Bit_score: 373
  • Evalue 7.00e-101

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 789
ATGCGGCACCTCAATACGGCCCTTGCGATCCTCTATGCCGGTGGGCTCTATATCTTCATCTTCCTGCCGGTCGCCGTTCTTGTGCTCTTCTCCTTCCAGGACGGCACGCTACCCGTGCCCCCCCTGCATGGCATGACCTGGAAGTGGTATGGCGAGATCTTCGCCGACAAAAAGCTGATGGCAGCGCTCTTTAACTCGCTCGTCGTTGCCATCGTATCGTCTGCAATCTCCTGCCTGCTCGGTTTCCTCGCAGCCTATGCCTTTGCCCGCTACAAGCTTCCCGCATCCGGCCTGCAGCGCGCCCTGATCGTCGCGCCGATGACGGTCAGCACGCTGATCATCGGGCTCGGCCTGCTGTCGATGCTGTCCAGGCTCAATGTTTCGCTGTCGCTATGGACCGTCGGCATCGGTCATGTCGTGATCAACCTGCCGCTCTGCTTTGCGATCATCTACGCCTCCATGGGCGGTCACCAGGTCAATATCGAGCGCGCCGCCCGCGATCTTGGCGCGAAGGACTGGCAGGTCATGGCACTCGTCACCGCACCAATGCTGATGCCATCCATCCTCGCCGCCTTCTTCCTGTCGGTGACCTTCAGCTGGGACGAGTTCATCATAGCCTTCCTGTTGTCGCGCTTCGACGTGACGCTTCCGGTCGAGATCTGGAGCATGCTGCGCTCCGGCCTCGACCCCAAGACCAACGCGATAGGCAGCGTCGTCTTCCTCCTCTCTGTCGCCTTCATCATCCTTATCGAACTCGCCGTCTTCAGAAAATCCGGGAAATCTCAATGA
PROTEIN sequence
Length: 263
MRHLNTALAILYAGGLYIFIFLPVAVLVLFSFQDGTLPVPPLHGMTWKWYGEIFADKKLMAALFNSLVVAIVSSAISCLLGFLAAYAFARYKLPASGLQRALIVAPMTVSTLIIGLGLLSMLSRLNVSLSLWTVGIGHVVINLPLCFAIIYASMGGHQVNIERAARDLGAKDWQVMALVTAPMLMPSILAAFFLSVTFSWDEFIIAFLLSRFDVTLPVEIWSMLRSGLDPKTNAIGSVVFLLSVAFIILIELAVFRKSGKSQ*