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cn_combo_scaffold_1467_35

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: 33496..35217

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1505946 species="Bacteria; P similarity UNIPROT
DB: UniProtKB
  • Identity: 79.3
  • Coverage: 574.0
  • Bit_score: 917
  • Evalue 1.10e-263
transcription-repair coupling factor n=1 Tax=Hoeflea sp. 108 RepID=UPI00037B7195 similarity UNIREF
DB: UNIREF100
  • Identity: 93.9
  • Coverage: 574.0
  • Bit_score: 1069
  • Evalue 0.0
DEAD/DEAH box helicase similarity KEGG
DB: KEGG
  • Identity: 77.7
  • Coverage: 574.0
  • Bit_score: 907
  • Evalue 1.70e-261

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Taxonomy

Mesorhizobium sp. SOD10 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1722
ATGAGCCTGCTGAAATCGATCGGCCTGCCTGGAGGTCGCGCCGGACAGTTCATCGTCGATGGCGTGGCCGATGGCTACGAGGCCTTCGCAATTGCCATTGCGGCCGCCGAGATGGCGCCGGACGGCCCTCTGCTGTTCGTGGCGCGCGACGGCCAGCGCCTGCCGCAGATCGTCGAAGCACTCAATTTCGTGGCGCCCGACGTGCCCGTGCTGGAACTGCCAGCATGGGACTGCCTTCCCTACGACCGTGTGTCACCGGGAGCGGATGCGGCGGCCCGCAGGCTCGATGCCCTGGCCGCGATCATCGCGCTCCGCAAGAACCCGCACCGGGCCGTCGTGCTGACGACCGCCAATGCGCTGCTGCAGCGTGTGCCGCCAGCCATGGCCATCGAGGCGCAGGAGTTCCGCGCCAAGCCGGGCAACCAGGTGGAGATGAACGCGTTGGTCGGCCGGCTTGAGCGTGCCGGCTTCGAGCGTGTGCCGACGGTGCGCGGTGTCGGCGAATTCGCCGTGCGCGGCGGCATCCTCGATCTCTATGCGCCGGGTGCCGCTGATGCGCTGCGCCTCGACTTCTTCGGAGACACGCTGGAGACGATCCGCGCCTTCGATGTGGCCACCCAGCGTACGACCGGCAGCCGCAACCAGGTGGTGCTGCAGGCGATGAGCGAGGTGGCGCTGACGCCGGAAACGATCAGCAAGTTCCGCCGCAGCTACATCGAAGCCTTCGGCGCGCCGTCGCGCGACGATGCGCTCTATGCCGCGGTTTCCGAAGGCAGGCGCTTTGCCGGCATGGAGCATTGGCTGCCGTTCTTCTATCCGCACATGGAAACGGTGTTCGAATACCTGCCCGAGGCGCCGGTCGTCTTCGACCACCTGGCGCGCGAAGCGCTGAGCGAGCGCCACACGCTGATCCTCGACCACTACGACGCGCGTCGGAAGCAGGCCGAGGGTGGCGGCATCAAGGATACCGTGCCCTACAAGCCGGTCGCGCCCGGGCTGATGTACCTGTCGCCCGAGGAGGTGACCACCGCACTGGCCGATCAGGCCAATGTCGAACTGACGCCGTTCGACACGCCGTTCACCAGCGGCCGCAGGGTGCTGCATGCCGGGTCGCACGCCGGCCGCAGCTTTGCCGAGGAGCGCGCCGACCCGAATGCCAACGTGTTTGACGTGGTGGCGCGTCACATCGCCGACCAGCGCGCGGCCAAGCGGCGCGTGGTCGTCGCAGGCTGGACCGAAGGTTCGCTCGACCGCCTGGCGCAGATCCTCGACGAGCACGATCTCGGCAACCTCAAGCGGGTCGACAGCCTGGCAGGCGTCGAGGCGCTGAAGCCGGGCGAGGCGGGTCTGGCAGTGCTGCCGATCGAATCCGGCTTCGAGGCGGGCGACCTGGTATTCGTCGCCGAGCAGGACATCCTCGGCGACCGCCTGATCCGGCGCTCGAAGAAGCGCAAGCGTGCCGCCGACTTCATCGCCGAGGCGTCGTCGCTGTCGGCTGGCGACATCGTCGTCCACGCCGACCATGGCATCGGCCGCTTCGTCGGGCTGAAGACCATCGAGGCAGCGGACGCACCGCATGACTGCCTAGAGATCCACTATGCCGCCGACGGCAGGCTGTTCCTGCCGGTCGAGAACATCGAGCTCCTGTCGCGCTACGGCTCGGATTCGGCCGAGGCGCAGCTCGACAAGCTCGGCGGCGGCGCCTGGCAGTCGCGCAAGGCC
PROTEIN sequence
Length: 574
MSLLKSIGLPGGRAGQFIVDGVADGYEAFAIAIAAAEMAPDGPLLFVARDGQRLPQIVEALNFVAPDVPVLELPAWDCLPYDRVSPGADAAARRLDALAAIIALRKNPHRAVVLTTANALLQRVPPAMAIEAQEFRAKPGNQVEMNALVGRLERAGFERVPTVRGVGEFAVRGGILDLYAPGAADALRLDFFGDTLETIRAFDVATQRTTGSRNQVVLQAMSEVALTPETISKFRRSYIEAFGAPSRDDALYAAVSEGRRFAGMEHWLPFFYPHMETVFEYLPEAPVVFDHLAREALSERHTLILDHYDARRKQAEGGGIKDTVPYKPVAPGLMYLSPEEVTTALADQANVELTPFDTPFTSGRRVLHAGSHAGRSFAEERADPNANVFDVVARHIADQRAAKRRVVVAGWTEGSLDRLAQILDEHDLGNLKRVDSLAGVEALKPGEAGLAVLPIESGFEAGDLVFVAEQDILGDRLIRRSKKRKRAADFIAEASSLSAGDIVVHADHGIGRFVGLKTIEAADAPHDCLEIHYAADGRLFLPVENIELLSRYGSDSAEAQLDKLGGGAWQSRKA