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cn_combo_scaffold_1745_26

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(22052..23581)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma54 factor n=1 Tax=Hoeflea sp. 108 RepID=UPI00037257BC similarity UNIREF
DB: UNIREF100
  • Identity: 86.9
  • Coverage: 511.0
  • Bit_score: 876
  • Evalue 1.30e-251
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1287287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhiz similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 511.0
  • Bit_score: 779
  • Evalue 2.40e-222
RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 78.1
  • Coverage: 508.0
  • Bit_score: 778
  • Evalue 1.40e-222

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Taxonomy

Mesorhizobium sp. LSHC414A00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1530
ATGGCGCTGTCGGCGAAATTGCAGCTTCGGCAGTCGCAGTCGCTGGTCATGACCCCGCAACTGATGCAATCGATCCGGCTGCTTCAGTTCACCCATGCCGAGCTGGAACGCTTCATCGACGATGAGATCGAGCGCAATCCGCTGCTCGAGCGCGCCGAAGTGCCCGACGATGTCGCCACCGAACAGTTCCCCAAGATCGAGACGCCCGGCGAGGCAGTGCCGCAGTCGAACGACGACTGGTTCGAGGGCGAGGCGGGGTGGAGTTCCGAGGCGATCTCCGAAAAGCTGGACACTTCCCTCGAGAACCTCTTTCCCGACGATCCGGGCGCGGTGGAGCGCGTCGGGCCAGACCTCGCCATGCAATGGAAGTCGGCGACTTCGGGCGCGGGCGGGGCCGCGGAAGCCTACGACATGGAAGACATGGCGGCGGCGGCCGTCACCTTGCGCGATCATGTCGGCGAGCAGATCGCCTTTGCCTTCTCCGACCCCATCGAGCGCCTGGTTGCGGCGGAGCTTGCCGATTGGCTCGACGAGATCGGCTACTTCCGCGGAGAGCCCACCGAGATCGCCGCGCGTCTCGGCGTCGACGAGGCGCTCGTCCTCAAAGTCCTGGCCGGTTGCCAGAGGCTCGATCCGGCCGGGATATTCGCCCGCGACCTTGCCGAGTGCCTGCGCATCCAGCTTGCCCGTCGCGACCGGCTGGACCCGGCCATGGCCGCGCTGGTCGACCACCTCGAGCTTCTGGCGAGGCGCGATTTCCAGAGCCTCAAGCGCATCTGTGGCGTGGACGAGGAGGACCTGCTCGCCATGCTCGGCGAGATCCGGGCGCTGGACCCGCGCCCCGGCGGCGCCTTCGCCGGTGGTGGCGCGGACACGATCGTGCCGGATGTCGAGGTGCGGCAGGCGGCCGACGGAAGCTGGGCCGTGGAGCTCAACCCGGAGACACTGCCGCGCGTGCTGGTCGACCAGGTCTATTTCGCGCAGGTGACGGCGCGGACCAAGGACCAGGGCGAGCGCAGCTTTCTCGCCGAGTGCCTGCAGAATGCGAACTGGCTGACCCGCAGCCTCGACCAGCGCGCCAAGACCATCCTCAAGGTCGCCACAGAGATCGTCCGCCAGCAGGACGCGTTCCTGGTCCATGGCGTGCGCCATCTGCGCCCGCTGAACCTGCGCACGGTGGCCGACGCGATCGGCATGCATGAATCGACCGTCAGCCGCGTAACCGCCAACAAGTTCATGTTGACGCCCCGGGGCGTGTTCGAATTGCGCTACTTCTTCACCGCGGCAATCGCTGCCTCCGGCGGCGGCGATGCCCACTCTTCGGAAGCCGTGCGCGACCGCATCCGCCAGCTGATCGAGGAAGAAGAACCCGCGGACGTCCTTTCCGACGACGCCATCGTCGACATCCTGCGCAAGAGCGGGGTCGACATAGCCAGGCGCACCGTCGCCAAGTACCGCGAGGGCATGAACATCGCCTCTTCGGTGCAGCGGCGACGGGAGAAGCGGGCACTGGCGAGCGCCGGGAGCTGA
PROTEIN sequence
Length: 510
MALSAKLQLRQSQSLVMTPQLMQSIRLLQFTHAELERFIDDEIERNPLLERAEVPDDVATEQFPKIETPGEAVPQSNDDWFEGEAGWSSEAISEKLDTSLENLFPDDPGAVERVGPDLAMQWKSATSGAGGAAEAYDMEDMAAAAVTLRDHVGEQIAFAFSDPIERLVAAELADWLDEIGYFRGEPTEIAARLGVDEALVLKVLAGCQRLDPAGIFARDLAECLRIQLARRDRLDPAMAALVDHLELLARRDFQSLKRICGVDEEDLLAMLGEIRALDPRPGGAFAGGGADTIVPDVEVRQAADGSWAVELNPETLPRVLVDQVYFAQVTARTKDQGERSFLAECLQNANWLTRSLDQRAKTILKVATEIVRQQDAFLVHGVRHLRPLNLRTVADAIGMHESTVSRVTANKFMLTPRGVFELRYFFTAAIAASGGGDAHSSEAVRDRIRQLIEEEEPADVLSDDAIVDILRKSGVDIARRTVAKYREGMNIASSVQRRREKRALASAGS*