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cn_combo_scaffold_2864_18

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(17659..18501)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000377157D similarity UNIREF
DB: UNIREF100
  • Identity: 87.5
  • Coverage: 280.0
  • Bit_score: 494
  • Evalue 7.90e-137
Transcriptional regulator RpiR family {ECO:0000313|EMBL:EYR77440.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. D similarity UNIPROT
DB: UniProtKB
  • Identity: 83.2
  • Coverage: 280.0
  • Bit_score: 478
  • Evalue 4.80e-132
Transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 73.9
  • Coverage: 280.0
  • Bit_score: 426
  • Evalue 7.40e-117
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 843
ATGGCATCGAAGGAACGGTCATTCCTCTTCCGCGTCAGGGAGGTCCTGGACGACCTGCATCCCGCCGAGCGACGGCTGGGTGATTTCGTATGCGACTTCCCCGGCGAACTGGCCAGCTATTCGGCCTCGGAGTTGGCCGCTCTGGCGCAAGTCTCCAACGCTACCGTGTCGCGCTTCGTCAAGCGTCTCGGCTACGAGAACTACGAGGAGGCGCGCCGCCATGCGCGCGAGGAGAAGCAGACCGGTTCGCGCCTGTTCCTGTCGACCTCGACCGACGCGGCAAGCGCCCAGTCGCTCGGGGCCCACGTCGCCCAAGGCATCGCCAACATCGAGGGCACCTTCGCCAACATCACCGACGCCCAGATCGACGCAGTCGCCGACGCCATGCTGGCGACCCGGAAAGTCTGGGTGCTCGGCTTCCGCTCGAGCCATCCCTTCGCCGAATATCTGCAGTGGCAGATGACGCAGGTGGTCGAGAACATCGTCGCCATCCCCGGCGGCGGCCAGACGCTGGGCGAGCATCTGGTCAGCGTCAGCAGGGGCGACGTCTGCGTCGTCTTCGGCTTGCGCCGGCGCATCGCCCGCATGGACATGATCCTCGCGGCGATCGAGAAGAGCGGCGCGCAGGTGCTCTACATCACCGACGAGGGCGTGCCGCACCGCCAGAGCGCGGCTTGGCATTTCCGCTGCCAGACGCTGGCGCCAGGCCCCCTCTTCAACCACGTGGCGGTGATGGCGATCTGCCACCTGCTCGCCACCCGCGCCATCGAACGCGCGGGTGCAGCCGGCCGCACCCGCCTCAGGGGCATCGAGGCCTTCGGCGACGCGCTCGAAGAGCTATAG
PROTEIN sequence
Length: 281
MASKERSFLFRVREVLDDLHPAERRLGDFVCDFPGELASYSASELAALAQVSNATVSRFVKRLGYENYEEARRHAREEKQTGSRLFLSTSTDAASAQSLGAHVAQGIANIEGTFANITDAQIDAVADAMLATRKVWVLGFRSSHPFAEYLQWQMTQVVENIVAIPGGGQTLGEHLVSVSRGDVCVVFGLRRRIARMDMILAAIEKSGAQVLYITDEGVPHRQSAAWHFRCQTLAPGPLFNHVAVMAICHLLATRAIERAGAAGRTRLRGIEAFGDALEEL*