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cn_combo_scaffold_3281_6

Organism: CN-SCN_Mesorhizobium_20x

partial RP 41 / 55 MC: 4 BSCG 38 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(3276..4145)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036065E1 similarity UNIREF
DB: UNIREF100
  • Identity: 72.7
  • Coverage: 289.0
  • Bit_score: 427
  • Evalue 9.30e-117
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EHS49624.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rh similarity UNIPROT
DB: UniProtKB
  • Identity: 46.5
  • Coverage: 286.0
  • Bit_score: 250
  • Evalue 2.90e-63
transcriptional regulator, LysR family protein similarity KEGG
DB: KEGG
  • Identity: 41.7
  • Coverage: 295.0
  • Bit_score: 207
  • Evalue 4.30e-51

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Taxonomy

Rhizobium sp. PDO1-076 → Rhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 870
ATGACGAAAAAGCGTTCGATGCCGCAGATGCGGGCGATCCAGTCTTTCGAAGCCGTCGCGCGCCATCTTTCCGTTTCTCTCGCGGCCGAAGAACTCGGCGTCACGCAAAGCGCGGTCAGCCACCAGGTCAGGCGACTGAGTTCGGAACTCGGCGAAAAGCTCCTCGAACGGCAGGGCCGCTCCCTTGTGCTGACCGACACGGGGCAACGCCTCGCGCTCGAGCTCGACCGCGCGTTCGACGTGATCGAACGCTCAACGGCACAGATCCTCGGAACAGGGGACAAGACCGTGCGCCTTGCCCTCTACGGCTCCTTTGCCATCGGTTGGCTCGTCGAGCGGCTGCCGGATTTCTACGCCGAGCACCCCGGGATAGATCTGCAACTCACCATGGTGAGCGAGGAGGACGAGTTGAGCGACAGGACGGCCGACGCCTTTGTGACGTCGGTGCCCTCGCAACGAGGATACTGGAGCGCGCTCCTCATGCAGGAGCAACTGGTTGCCGTGACGCCTACCCGATTTGGCTCCTGGCCGTGCCCCTTGATCACGACCGAAGTTGCTTCATCCTCGCCAGGCGCGGACTGGATCGAGTACTGCCGCGCCAATCGCCTTGAACTTGCAGCCGAGCAACGGGAGACGTGGAAGATGTCCACACACTACCTGCTGGCGTTCGAGATGGCACGTGCAGGCATCGGCGCGGCCCTGGTTCCCGACTTCCTCGCAGAGCGGGGCCTTGGTGATGGCACTTTGGTGAAGCTGCCTGGAGAGCCGATGCCCACTGGGTTGAACTACTACCTGTCCATGAAGTTCAGCCGCCGCCAGGAACCGGCGCTTGTTGCACTGACGCAATGGCTGCGGGCCGCGATACGCTAG
PROTEIN sequence
Length: 290
MTKKRSMPQMRAIQSFEAVARHLSVSLAAEELGVTQSAVSHQVRRLSSELGEKLLERQGRSLVLTDTGQRLALELDRAFDVIERSTAQILGTGDKTVRLALYGSFAIGWLVERLPDFYAEHPGIDLQLTMVSEEDELSDRTADAFVTSVPSQRGYWSALLMQEQLVAVTPTRFGSWPCPLITTEVASSSPGADWIEYCRANRLELAAEQRETWKMSTHYLLAFEMARAGIGAALVPDFLAERGLGDGTLVKLPGEPMPTGLNYYLSMKFSRRQEPALVALTQWLRAAIR*